Streptomyces phaeoluteigriseus: NFX46_33955
Help
Entry
NFX46_33955 CDS
T08568
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sphw
Streptomyces phaeoluteigriseus
Pathway
sphw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFX46_33955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphw03019
]
NFX46_33955
03009 Ribosome biogenesis [BR:
sphw03009
]
NFX46_33955
Enzymes [BR:
sphw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NFX46_33955
Messenger RNA biogenesis [BR:
sphw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NFX46_33955
Ribosome biogenesis [BR:
sphw03009
]
Prokaryotic type
rRNA processing factors
NFX46_33955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
USQ88316
LinkDB
All DBs
Position
complement(7668661..7672953)
Genome browser
AA seq
1430 aa
AA seq
DB search
MLEPTESTESVPDSATNTPSDTLPPRRRRRAASRPAGPPVGAAETPAETVAPAVPAADSV
ADLAAEDSENIGEETTEDTVVEAAAEAEEAAPAARPRRRATRRASAPAGAPAGASATAEA
AETVVPAAETVSAPAEPAAAVAAEEQAPAEEPAPRRTRRRATRTVTAPAAPERTETTQTV
AETTEPVAPEVAEASVTADVPVTAEPAEVAPAGRTRRRATRRATAPTGAPQAAEVTETVA
ETTEPVAPEVAEASVTADVPVTAEPAEAAPAGRTRRRATRRATAPTGAPLAAEVTETAAA
VADVSEVAAETPAPETPAVEEAPRRTRRRSARAVAAPAAAPEQAEAPAEPAVVEEKAPEA
PAPQAEEEAGPRRGRRRVTRAAVGFSAPPRPAGEEEDTPRRPARPAVAVFQAPVFTEPRF
QTPERAAAEAAAADVEVEVEEPVEEPTAPVEVAEELPEEQTGSRRRRRRRGAVQAEESAE
PTRTVEPSAEDEAEPEEAEDAADEAAEGDDDTDEGASRRRRRRGGRRRRRGDSADGDSGD
ADVEELAAEQAVQDAEDTAEQEDEDAEEGHADDEGGSTAGSRRRRRRRRRAGDGTPDAEP
VDSDPERTVVKVREPRKASEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEF
LARREAVERVMVVRQHGDRTQIGVLEDGVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSME
AAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQPVLAQVTKDPIGHKGARLT
SQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKSILKKIVPEDAGVIVRTAAEGASEDE
LRRDVERLQSQWEDIQKKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFTKVVVSGDEAWST
IHGYVSHVAPDLADRLSRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMV
VVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLEQNRDLV
LRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHLDQP
TAVGGGGKRKKRGRGGDVQEHDHEHEHETAAAETVVSAGEEAEAETAAEVAAEVAEPVAL
EVAEFEPDEELYSSVAEAEAAAGRGRGRRRSSRRASAPAGAPRGGAPRREAAVEQFAEVP
TAQDVSAEAEAERPVQPAEAAVAHAEPVAVEDPVVEAPVTEAPVTEEAAPKGRTRRRATR
KVSAPAGSPAGAEAAVVTVAESAPAQAPTEQQEAQAEPVAEPVAEPVAESAAPARPRRRA
VRKATAPTASEETAVVVVPSAAAETPAEAPADAEAETGEVSEEGAPVKKTAARKTAKKAT
AKKAATKKTVAKKTAAKKTVAKKTTAKKAASKTTAAAQQSVSSVSATTED
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaatccacagagtccgtaccggactccgcgacgaacaccccgagc
gacaccctgccgccgcgtcgtcggcgccgtgccgcttcccgaccggcgggtccgccggtc
ggtgccgccgagaccccggccgagaccgtcgcgccggccgtaccggccgccgactccgtc
gccgacctggccgcggaggactccgagaacatcggggaagagacgacggaggacaccgtc
gtcgaggccgccgcggaggccgaagaggccgcacccgccgcgcgtccgcggcgccgggcc
acccgccgggcctccgcgcccgccggtgctccggccggcgcttccgccacggccgaggcc
gccgagaccgtggtacccgcggccgagaccgtgtccgcgcccgccgaaccggcagcggcc
gtcgccgcggaggagcaggcccccgccgaggagcccgctccgcgccgcacccgccgccgg
gccacgcgcaccgtgacggcacccgccgccccggagcggaccgagaccacgcagaccgtc
gcggagaccactgagcccgtggcccccgaggtcgcagaggcatccgtgacggcagatgtg
cccgtgaccgcagagccggcagaggtcgcgcccgccgggcggacccgtcgcagggccacc
cgccgggcgaccgcgcccacgggtgcgccgcaggccgccgaggtcaccgagaccgtcgcg
gagaccactgagcccgtggcccccgaggtcgcagaggcatccgtgacggcagatgtgccc
gtgaccgcagagccggcagaggccgcgcccgccgggcggacccgtcgcagggccacccgc
cgggcgaccgcgcccacgggtgcgccgctggccgccgaggtcaccgagaccgccgcggcg
gtcgccgacgtcagcgaggtcgccgcggagacgcccgccccggagacgcccgccgtagag
gaggccccgcgtcgtacgcgccgccggtcggcccgtgccgtcgcggcgcccgcagcggcg
ccggagcaggccgaggctcccgccgagcccgccgtcgtcgaggagaaggcgcccgaggcg
cccgctccgcaggccgaggaggaggcaggcccccgccgtgggcgtcggcgcgtcacccgg
gccgccgtcgggttctccgcgcctccgcgtccggccggcgaggaggaggacaccccgcgt
cgtcccgcccgtcccgcggtcgccgtcttccaggcgcccgtgttcaccgagccgcgcttc
cagacgccggagcgcgccgccgcggaggccgcggccgccgacgtcgaggtcgaggtcgag
gagcccgtggaggagcccacggcgccggtcgaggtcgccgaggagcttccggaggagcag
accgggtcgcggcgccgccgcaggcgccggggtgccgtccaggccgaggagtccgcggag
ccgaccaggaccgtcgagccctccgccgaggacgaggcggagccggaggaggccgaggac
gccgccgacgaggccgccgagggtgacgacgacaccgacgagggcgcctcgcgccgccgt
cgccgccggggcggccgtcgccgtcgtcgcggtgacagcgcggacggcgactccggtgac
gccgatgtcgaggagctggccgccgagcaggccgtccaggacgccgaggacaccgccgag
caggaggacgaggacgccgaggagggccacgccgacgacgagggaggctccaccgcgggc
agccgtcgccgccgtcgccgtcgccgccgcgccggggacggcacccccgacgccgagccg
gtcgacagcgacccggagcgcaccgtcgtcaaggtccgcgagccgcgcaaggccagcgag
ccgtccgacgaggtccagtccatcaagggctcgacccgtctggaggcgaagaagcagcgc
cgccgggaaggccgtgagcagggccgccgtcgcgtcccgatcatcaccgaggccgagttc
ctggcccgccgtgaggccgtcgagcgcgtgatggtcgtccgccagcacggtgaccgtacg
cagatcggcgtcctggaggacggcgtgctcgtcgagcactacgtcaacaaggagcagtcg
acctcgtacgtcggcaacgtctacctgggcaaggtccagaacgtgctgccgtcgatggag
gccgccttcatcgacatcggcaagggtcgcaacgccgtcctgtacgccggtgaggtcaac
ttcgaggcgctcggcatggccaacgggccgcgccgcatcgagtccgccctcaagtcgggc
cagccggtgctcgcgcaggtcaccaaggacccgatcggacacaagggcgcccgtctgacc
agccaggtctccctgccgggccgctacctcgtgtacgtccccgagggctcgatgaccggc
atcagccgcaagctgcccgacaccgagcgggcccggctgaagagcatcctcaagaagatc
gtccccgaggacgcgggcgtcatcgtgcgcaccgcggccgagggcgcgagcgaggacgag
ctgcgccgcgacgtcgagcggctccagtcgcagtgggaggacatccagaagaaggccaag
agcggcaacgcgccgacgctgctctacggcgagccggacatgaccgtccgggtcgtccgc
gacatcttcaacgaggacttcaccaaggtcgtcgtcagcggtgacgaggcctggtcgacg
atccacggctacgtctcgcacgtcgcccccgacctggccgaccggctttcgcggtggacc
tccgaggtcgacgtcttcgccacctaccggatcgacgagcagctcgccaaggcgctggac
cgcaaggtctggctgcccagcggcggttcgctggtgatcgaccggaccgaggcgatggtc
gtcgtcgacgtcaacaccggcaagttcaccggtcagggcggcaacctcgaggagacggtc
accaggaacaacctggaggcggccgaggagatcgtgcgtcagctcaggctgcgcgacctc
ggcggcatcatcgtgatcgacttcatcgacatggtgctggagcagaaccgggacctggtg
ctgcggcgcctgctggagtgcctgggccgggaccgtacgaagcaccaggtcgccgaggtg
acctcgctggggctcgtgcagatgacccgcaagcgggtcggccagggcctgctggagtcg
ttctccgagacctgcgtccactgcaacggccgcggtgtcatcgtccatctcgaccagccg
accgccgtcggtggcggcggcaagcgcaagaagcgcggccggggcggcgacgtccaggag
cacgaccacgagcacgagcacgagacggccgccgccgagaccgtggtgagcgcgggcgag
gaggccgaggccgagaccgcggccgaggtcgccgccgaggtggccgagccggtcgccctg
gaggtggcggagttcgagcccgacgaggagctgtacagcagcgtcgccgaggcggaggcc
gccgcgggccgcggtcgtggccgacgccggtcgagccgccgggcctccgcccccgcgggg
gcgccgcggggcggcgcaccgaggcgggaggccgcggtcgagcagttcgcggaggttccc
acggcacaggacgtgtccgccgaggcggaggccgagcgtccggtgcagccggccgaggcc
gccgtcgcgcacgccgagccggtcgccgtggaggacccggtcgtcgaggcccccgtcacc
gaggcccccgtcaccgaggaggccgcacccaagggccgtacgcgccgacgggccacccgc
aaggtgtccgcgccggccggttcgcccgccggagcggaggccgccgtcgtgacggtcgcc
gagtccgcgcccgcgcaggctccgacggagcagcaggaggcgcaggccgagccggtcgcc
gagccggttgccgagccggtcgccgagagcgcggctccggcccgtccgcggcgccgtgcc
gtccgtaaggccaccgcgcccaccgcgtccgaggagacggccgtcgtggtcgtcccgtcg
gccgcggcggaaaccccggccgaggctccggccgacgccgaggcggagaccggcgaggtc
tcggaggagggcgccccggtcaagaagacggccgcccgcaagacggcgaagaaggccacg
gcgaagaaggccgccaccaagaagacggtggcgaagaagacggccgcgaagaagacggtg
gccaagaagacgacggccaagaaggcggcgtcgaagacgacggcggcggcgcagcagagc
gtctcgtccgtctcggccaccacggaggactga
DBGET
integrated database retrieval system
