Sphingopyxis sp. PAMC25046: E5675_02300
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Entry
E5675_02300 CDS
T06315
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sphx
Sphingopyxis sp. PAMC25046
Pathway
sphx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5675_02300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphx03019
]
E5675_02300
03009 Ribosome biogenesis [BR:
sphx03009
]
E5675_02300
Enzymes [BR:
sphx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E5675_02300
Messenger RNA biogenesis [BR:
sphx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E5675_02300
Ribosome biogenesis [BR:
sphx03009
]
Prokaryotic type
rRNA processing factors
E5675_02300
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QCB56789
LinkDB
All DBs
Position
complement(505043..507652)
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AA seq
869 aa
AA seq
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MLIDARHREETRVAVTKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVEYGGN
RHGFLAFSEIHPDYYQIPKEDRDALLREEAEHAAAAAQRAEEDLDELEGDVADVEYHDED
ENGDAPAPETIGEDGDGDEEEAAENGDADDGESEEGTEEGKDGRGDRKRRGRDGRKGGRG
RGRGRRNDDEDGESRMSLRRRYKIQDVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRY
CVLMPNTMHGGGISRKISNGADRRKLKAMIDELNLPPTMGCIVRTAGMSRTKVEIKRDFD
YLARLWDEIRENTLGSSAPALIHSDSDLVKRAIRDIYHKDIEEVLVEGDDGYKAAKQFMK
LLMPSHARRVKQYADPVSLYQRYGVEDQLAGMLNPVVQLKSGGYLVINPTEALVSIDINS
GRSTREHNIEQTALNTNLEAAHEIARQLRLRDMAGLVVIDFIDMDHGSNVRKVERAMKDA
LKNDRARIQVGRISGFGLMEMSRQRLRTGVLEASTRPCPHCEGTGLVRTASSAGLSALRL
IEEEAARGKGNKITLRASQEATFYLLNEKRRELREIEELYGVTVEILPDGETEGARMAVE
VSGPPPVARRSFAPITPIEDDDDDYPEDEEEEAEEEVADERPARSRDREEGEGDGDGRKR
RRRRRRGRRGRRDEEGNEIGEGSDGGEDRDGDSADEAEAETAPAETVEAASEADAEEAEA
KPRRRRGGRGRKKADTADAADEAVVEAEAVPAEAAEAAQPVAEEAPVAEEKPKRKRAPRK
TKAATEAEAATAAAAAAPVVEAAPEPEAEPAKPAPKKRASRAKKAVAAEAAPEAATARDA
EPVAANGDEGEEGPDGEPRRGWWQRTFGN
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgttgatcgacgcgcggcaccgggaagaaacccgggtcgccgtcaccaagggaaaccga
atcgaggagtttgatttcgagtccgccgagcacaagcagctcaagggcaatatctatctg
gccaaggtaacccgcgtcgaaccgtccttgcaggcggcgttcgtcgaatatggcggcaat
cgccacggcttcctcgctttcagcgaaatccaccccgactattaccagattccgaaggaa
gaccgcgacgcgctgctgcgcgaagaggccgaacatgccgccgccgccgcccagcgcgcc
gaggaggatctcgacgagctcgagggcgatgtcgccgacgtcgaatatcacgacgaagac
gaaaatggcgatgcccccgcccccgaaaccatcggcgaagatggcgatggcgacgaggaa
gaggccgccgaaaacggcgatgccgacgatggcgaaagcgaagaaggcaccgaggaaggc
aaggatggccgcggcgatcgcaagcgccgcgggcgtgacggtcgcaagggcggacggggc
cgcggacgtggccgccgcaatgacgacgaggacggcgagagccgcatgtcgctgcgccgc
cgctacaagatccaggacgtcatccgtcgccgccaggtgatgctggtgcaggtcgtcaag
gaagagcgcggcaacaagggcgcggcgctgactacctatctgtcgctcgccggccgttac
tgcgtgctgatgccgaacacgatgcacggcggcgggatcagccgcaagatttcgaacggt
gccgatcgccgcaaattgaaagcgatgatcgacgaactcaacctgccgccgacgatgggc
tgcatcgtccgcaccgcggggatgagccgcaccaaggtcgagatcaagcgcgacttcgac
tatctcgcccgcctgtgggacgagattcgtgagaatacgctgggcagctcggcgccggcg
ctgatccattcggacagcgacctcgtcaagcgcgcgatccgcgacatctatcacaaagac
atcgaggaagtgctcgtcgagggcgacgacggctataaggcggcgaaacagttcatgaag
ctgctgatgccgagccacgcccgccgcgtgaagcaatatgccgatccggtctcgctttat
cagcgctacggcgtcgaggaccagctcgcggggatgctcaatcccgtcgtccagctgaaa
tcgggcggctatctggtgatcaatccgaccgaggctctggtttcgatcgacatcaactcg
ggccgctcgacacgcgagcataatatcgagcagaccgcgctcaataccaacctcgaggcc
gcgcacgaaatcgcgcgccaattgcgcctgcgcgacatggcgggcctcgtcgtgatcgac
ttcatcgacatggatcatggctcgaacgtccgaaaggtcgagcgcgcgatgaaggatgcg
ctgaagaacgaccgcgcgcgcatccaggtcggccgcatctcgggcttcgggctgatggag
atgagccgccagcgcctgcgcaccggcgtgctcgaggcatcgacgcgcccgtgcccgcat
tgcgaaggcactggcctcgtccgcactgcttcgtcggcgggtctcagcgcgctgcgcctg
atcgaagaggaagccgcgcgcggcaagggcaacaagatcacgctgcgcgcaagccaggaa
gcgaccttctacctgctcaacgagaagcgccgcgaattgcgtgagattgaagaactctat
ggcgtcacggtcgaaatcctgcccgacggcgaaaccgaaggcgcgcgcatggcagtcgaa
gtgagcggcccgccaccggtcgcgcgccgcagctttgcaccgatcacgccgatcgaggat
gacgacgacgactatcccgaggacgaggaagaagaagccgaagaggaagtcgccgacgaa
cgtcctgcgcgatcacgcgaccgtgaggagggcgaaggcgatggtgacgggcgcaagcga
cgccgccgtcgacgccgtggtcgtcgtggtcgccgcgacgaagaaggcaatgaaatcggt
gaaggcagcgacggcggcgaggatcgcgatggcgacagcgccgacgaagccgaagccgaa
accgcgccggccgaaactgtcgaggctgcttcggaagcggatgccgaggaggccgaagcc
aagccccgccgccgccgtggtggacgcggccgcaagaaggccgataccgcggacgccgcc
gacgaggcggtagtcgaagccgaagcggtaccggccgaggcagccgaagccgcccaaccg
gtcgccgaagaagcaccggttgccgaggagaagccgaagcgcaagcgggcgccgcgcaaa
accaaggcagcgaccgaagccgaagcggcgactgcggccgcggcagcagcgccggtggtc
gaagcagcgcccgagcccgaagccgaacccgccaagcccgcgcccaaaaagcgcgcgagc
cgcgccaagaaggccgtcgccgccgaggccgcgcccgaagccgccacggcgcgcgacgcc
gaaccggtcgccgccaacggcgacgagggagaagaaggccccgacggggaaccgcgccgc
ggctggtggcagcgcacctttggcaattga
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