Sphingopyxis sp. PAMC25046: E5675_02875
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Entry
E5675_02875 CDS
T06315
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
sphx
Sphingopyxis sp. PAMC25046
Brite
KEGG Orthology (KO) [BR:
sphx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphx03400
]
E5675_02875 (addB)
Enzymes [BR:
sphx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E5675_02875 (addB)
DNA repair and recombination proteins [BR:
sphx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
E5675_02875 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QCB53487
UniProt:
A0A4P7RRK5
LinkDB
All DBs
Position
624731..627739
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AA seq
1002 aa
AA seq
DB search
MVDARPTLFSIPVQRAFADALAAGLIDRFADGALGLAQGLILLPSNRARSAVQAAFVRAG
GAGLLMPRLAVIGDADLDENVALALDPIDESDAIPPAIDALKRRLMLAALIEKHDPPGEA
PIAGAAAFQLAEGLGRVIDQLHYEEVAPARLADIESALGDLAGHWQASWRRLSLLVGEWP
KLLAATGHIDRADRRNRLLDRVARGWRAAPPARFVVAAGVTTAAPAIARLLRTVADLPQG
MVVLPGLDLGMADEEWEALGPVKADPEKPGERPFETHPQYHLKLLLGRMSVSREEVQPWD
GTSPFDGPDARASFTSLLFAPAAYTARWQQTGDLRAGIAGVSAAVFADDGQEAQGIALMM
RAALETPARTAALVTPDRALATRVAAALARWGIAVDDSAGQPLGQTPPGAVLLALAEFAA
AFDPVRLIALLGHPLVRAGEARLGWLDQVRRLDLVLRGPGLVPGWDGVTMRIAERAADPQ
ARSHDAAKLIDLWWADVASALQATLAPFAAGAPAPPAMLLGALQDALGWLTGEGVWTGHA
GRALSELFDRWALAKGDGPALVAPADFPAMLADLLGGESVRPPYGGHPRLFIWGLLEARL
QRADLMILGGLDEGRWPPQQNPDPWLAPGIRRMLGLAAPERQQGAAAHDFAGAFAAREVV
VTRAQRSGGDPAVASRFWLRLAALAGELPEARLGDASVTALAAALDVPPGAIEPAQMPQP
RPPADARPGQISVTGVDLLAKDPYAFYAGRILRLSVLDPLRAGPDPRWLGTRIHAFMEDW
QRAGATPEALRIELDHLYCDPALDALARAFWFPRIEPALRWAAERVWEARAEGREPVAAE
VPGVHELNGIRLSGKADRIDRLADSSLAIVDYKTGAAPSGSAAAEGLDNQLGLLGLLAEM
GKVEGVAAGPVASLEYWSLKADRAKGTDGSIAPTHGSRRKLKTAEDAVARAYDAFAELTA
LYLLGDAPFAPGDAVKRFTDYDQLMRRDEWFGRGRDADGDAP
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggttgatgcaaggcccacgcttttttccattccggtccagcgggccttcgccgatgcg
ctcgcggcggggctgatcgaccgctttgccgacggcgcgctcggactcgcgcaggggttg
atcctgctgccgagcaaccgcgcgcggagcgcggtgcaggcggcgttcgtgcgcgcaggc
ggcgcggggctgctgatgccgcggctcgcggtgatcggcgatgccgacctcgacgagaat
gtcgcgctcgcgctcgacccgatcgacgagagcgacgcgattccacccgcgatcgacgcg
ctcaagcggcggctgatgctcgcagcgctgatcgaaaagcacgatccgccgggcgaggcg
ccgatcgccggcgccgcggccttccagctcgccgaggggctgggacgcgtgatcgaccag
ctccattatgaggaggtcgcgccggcgcggctcgccgatatcgaaagcgcgctcggcgac
ctcgccgggcattggcaggcgtcgtggcggcggctgtcgctgctcgtcggggaatggccg
aagctgctcgcggcgacggggcatatcgaccgcgccgaccgccgcaaccggttgctcgat
cgcgtggcgcggggatggcgcgccgcgccgccggcgcgcttcgttgtcgcggcgggcgtg
acgaccgcggcgcccgcgatcgcgcggttgctgcgcaccgtcgccgacctgccgcagggc
atggtggtgctgccggggctcgacctcggcatggcggacgaggagtgggaagcgctcggc
ccggtgaaagccgatcccgaaaagcccggagagcgcccattcgaaacgcatccgcaatat
catctgaagctgctgctcgggcggatgagcgtttcgcgcgaagaggtgcagccgtgggat
ggaacatcgccgttcgacggccccgatgcgcgcgcgtccttcacctcgctgctcttcgca
cccgctgcctataccgcgcgctggcagcagacgggcgacttgcgtgcgggcatcgcgggg
gtgagcgccgcggtgttcgccgacgacgggcaggaggcgcaggggatcgcgctgatgatg
cgcgccgcgctcgaaacccccgcacgcaccgcggcgctggtgacccccgaccgcgcgctt
gccactagggtggcggcggcgctcgcgcgctggggcatcgcggtcgacgacagcgcaggg
cagccgctggggcagacgccgccgggggcggtgctgctcgcgctcgctgaattcgccgcg
gctttcgatccggtgcggcttatcgcgctgctcgggcatccgttggtgcgcgcgggcgag
gcgcggttgggttggctcgaccaggtgcggcggctcgatctggtgctgcgcgggccggga
ctggtgccgggctgggacggggtgacgatgcggatcgccgagcgcgccgccgatccgcaa
gcgcgcagccacgacgcggcgaagctgatcgacctatggtgggccgacgtcgcctccgcg
ctgcaggcgacgctcgcaccgttcgcggcgggcgcgccggcgccgcccgcgatgctgctc
ggggcgttgcaggacgcgctcggctggctgacgggcgagggggtgtggacgggccatgcc
gggcgcgcgctgtccgagctgttcgaccgctgggcgctggcgaagggcgacggcccggcg
ctcgtcgcgcccgccgatttcccggcgatgctggccgatttgctcgggggcgaaagcgtg
cggccgccctatggcgggcatccgcggctgttcatctgggggttgctcgaagcgcggctg
cagcgcgccgacctgatgattttgggcggcctcgacgaggggcgctggccgccgcagcaa
aaccccgatccgtggcttgcgccgggcatccgccggatgctcgggctcgcggcgcccgag
cgccagcagggcgcggcggcgcatgacttcgcgggcgccttcgcggcgcgcgaggtggtg
gtgacgcgcgcgcagcgtagcggcggcgaccccgcggtcgcgtcgcgcttctggctgcgg
ctcgcggcgctcgcgggcgaactgcccgaggcgcggctgggggacgcaagcgtgaccgcg
ctcgcggcggcgctcgacgtgccgccgggcgcgatcgagcccgcgcagatgccgcaaccg
cgcccgcccgccgacgcgcggccgggccagatcagcgtcaccggcgtcgacctgctcgcg
aaggacccctacgcattttacgcggggcgcatcctgcggctttcggttctcgacccgctg
cgcgccgggcccgatccgcgctggctgggcacgcgcattcacgcgttcatggaggactgg
cagcgggcgggggcgacgccagaggcgctgaggatcgaactcgaccacctctattgcgac
ccggcgctcgatgcgctcgcgcgcgctttctggtttccgcggatcgagcctgcgttgcgc
tgggcggccgaacgcgtgtgggaagcgcgcgccgaggggcgcgaaccggtcgcggccgag
gtgcccggcgtgcatgaactcaacggcattcggctgtcgggcaaggccgaccggatcgac
cggcttgccgactccagtcttgcgatcgtcgattacaagaccggtgcggcgccgagcggc
agcgcggccgcggaagggctcgacaatcaattggggctgctcgggctgctcgccgaaatg
ggcaaggtcgagggggtcgcggcggggccggtcgcgagcctcgaatattggagcctcaag
gccgaccgcgccaaggggacggacggcagcatcgcgccgacgcacggatcgcggcgcaaa
ctcaagaccgccgaggatgcggtcgcgcgcgcctatgacgccttcgcggagcttactgca
ctctacctgctgggcgacgcgccattcgcgccgggcgacgcggtgaagcgcttcaccgat
tacgaccagctgatgcgccgcgacgaatggttcgggcgtgggcgcgatgcggatggggac
gcgccatga
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