Sphingopyxis sp. PAMC25046: E5675_04160
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Entry
E5675_04160 CDS
T06315
Name
(GenBank) DUF4130 domain-containing protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sphx
Sphingopyxis sp. PAMC25046
Pathway
sphx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sphx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
E5675_04160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphx03400
]
E5675_04160
Enzymes [BR:
sphx01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
E5675_04160
DNA repair and recombination proteins [BR:
sphx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
E5675_04160
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
QCB53711
LinkDB
All DBs
Position
891900..893327
Genome browser
AA seq
475 aa
AA seq
DB search
MREVVLAVPGDFAEWRSAARGLLANGVAPEEVSWCDSAAGASLFGEAGTPARPGAVVLPR
ELLEIAERVICHRGAEVPARLYRVIWRAARDRLLLARTTDADVDWLRKADKAIRRDVHKM
HAFVRFRRLGEEEGRESFAAWFEPTHRILRLTAPFFQRRFTGMDWAIVTPDARAIWQGET
LVYGPGGTKDEVPGSDVVEDQWRTYYGAIFNPARVKIDAMRAEMPKKYWKNLPEAQDIAP
LLAGAEARVERMREAAVSMANPLTEKWRTRVPEDLLLDDDVKTLGDVARAIDRCTRCPLY
CNATQGVAGEGPEAARIMLVGEQPGDQEDLQGRPFVGPAGLVLDQALEEAGLDRARLFLT
NAVKHFKFEPRGKRRLHQNPTTGEIDICRWWLDKERALVQPDLIVTLGASALRGVTGKSA
SIKSMRGAVHELEGGTKLIATIHPSFLLRMPDRTRAAEERKAFIADLIRARKLAA
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgagggaggtcgttctcgcggtgccgggcgatttcgccgaatggcggagcgccgcacgc
gggctgctcgcgaacggcgtcgcgcccgaggaagtgagctggtgcgacagcgcggcgggg
gcatcgctgttcggcgaggcgggcactccggcacgcccgggtgcggtggtgctgccgcgc
gagttgctcgaaatcgccgagcgcgtgatctgtcatcgcggcgccgaggtgccggcgcgg
ctctatcgcgtgatctggcgcgcggcgcgcgaccgcctgcttctggcgcggaccaccgac
gccgatgtcgactggctgcgtaaggccgacaaggcgatccgccgtgacgtgcacaagatg
cacgcgttcgttcgcttccggcggctcggtgaagaagaaggacgcgagagtttcgccgcc
tggttcgagccgacgcatcgaatattacggctgaccgcgcccttctttcagcggcgcttc
acgggaatggactgggcgatcgtcactcccgatgcgcgcgcgatctggcagggcgagacg
cttgtctacggccccggcgggacgaaggacgaggtgccgggcagcgatgtcgtcgaggat
cagtggcgcacctattatggcgccatcttcaacccggcgcgcgtgaagatcgacgcgatg
cgcgccgaaatgccgaaaaaatattggaagaatctgcccgaggcgcaggatatcgcgccg
ctgctcgcgggcgccgaggcgcgggtggaacgcatgcgcgaagcggccgtttccatggcg
aacccgttgaccgaaaaatggcggacgcgcgtgcccgaagacttgctcctcgacgacgat
gtgaaaacgctgggcgacgtcgcgcgcgcgatcgaccgctgcacgcgctgtccgctctat
tgcaatgcgacgcagggcgtggcgggcgagggaccggaagcggcgcgcatcatgctggtc
ggcgagcagccgggcgaccaggaggatctgcaggggcggccgttcgtcggtccggcaggg
ctggtgctggaccaggcgctggaagaagcagggctcgaccgcgcgcgattgttcctcacc
aacgcggtcaagcatttcaagttcgagccgcgcggcaaaaggcggctccaccagaatccc
acgacgggcgaaatcgatatctgccgctggtggctcgacaaggaacgcgcgctggtgcag
cccgacctgatcgtcacattgggcgcgagcgcgctgcgcggggtgacggggaagagcgcg
agcatcaagtcgatgcgcggcgccgtgcatgaactcgaaggggggacgaagctgatcgcg
acgatccatccgtccttcctgctccgcatgcccgaccggacacgcgccgccgaggagcgc
aaggccttcatcgccgacctgatccgcgcgcgaaagctcgccgcctga
DBGET
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