Sphingopyxis sp. PAMC25046: E5675_10640
Help
Entry
E5675_10640 CDS
T06315
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
sphx
Sphingopyxis sp. PAMC25046
Pathway
sphx02024
Quorum sensing
sphx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5675_10640
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
E5675_10640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphx03019
]
E5675_10640
03036 Chromosome and associated proteins [BR:
sphx03036
]
E5675_10640
Messenger RNA biogenesis [BR:
sphx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
E5675_10640
Chromosome and associated proteins [BR:
sphx03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
E5675_10640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
QCB54845
LinkDB
All DBs
Position
2276082..2276612
Genome browser
AA seq
176 aa
AA seq
DB search
MHRQEQEANVSDKNQNLQDIFLNALRKSKTPVTMFLVKGVKLQGIITWFDNFSLLLRRDG
QSQLVYKHAISTVMPSHDFDLSLLGDNLRDAPASKGKALQDVFLNAVRRSDESVTMFLVN
GVMLQGDIVAFDLFCMLLERERQVQLVYKHAISTVQPNGPINLTDNGEGDGEADDA
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
ttgcaccgccaagaacaggaggcaaatgtgtccgataaaaaccagaatctccaggatatt
ttcctcaacgccctccgcaagagcaagaccccggtgaccatgttcctggtcaagggcgtc
aagctgcagggcatcatcacctggttcgacaatttctcgctgctgctccgccgcgacggc
cagtcgcagctggtgtacaagcatgcgatctcgacggtgatgccgtcgcacgatttcgac
ctgtcgctgctcggcgacaatctgcgcgatgcgccggcgagtaagggcaaggcgttgcag
gatgtgttcctgaacgccgtccgccgttcggacgaatcggtcacgatgttcctcgtcaac
ggcgtgatgctgcagggcgacatcgtcgccttcgacctcttctgcatgctgctcgagcgc
gagcggcaagtgcagctcgtctacaagcacgcgatttcgaccgttcagccgaacgggccg
atcaacctgaccgacaatggcgagggtgacggcgaagcggacgacgcctga
DBGET
integrated database retrieval system
