Sphingopyxis sp. PAMC25046: E5675_11240
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Entry
E5675_11240 CDS
T06315
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sphx
Sphingopyxis sp. PAMC25046
Pathway
sphx03030
DNA replication
sphx03430
Mismatch repair
sphx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E5675_11240 (dnaE)
03430 Mismatch repair
E5675_11240 (dnaE)
03440 Homologous recombination
E5675_11240 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphx03032
]
E5675_11240 (dnaE)
03400 DNA repair and recombination proteins [BR:
sphx03400
]
E5675_11240 (dnaE)
Enzymes [BR:
sphx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E5675_11240 (dnaE)
DNA replication proteins [BR:
sphx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E5675_11240 (dnaE)
DNA repair and recombination proteins [BR:
sphx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E5675_11240 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
tRNA_anti-codon
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
QCB54954
UniProt:
A0A4P7RXJ2
LinkDB
All DBs
Position
complement(2408496..2411981)
Genome browser
AA seq
1161 aa
AA seq
DB search
MAYSPFVPLRVFSSFTMLEGAIEPKAIAKAARERGFPAIAVADRNGLYGVMAFGEACKAA
GVQPIVGTLLSVARPGQRIANGAPLIDWLALYAQDDAGYDNLCALVSAAHLGRPVEQDPH
VLLSDIAGKTDGLICLTGGGEGALARLLAGEQKSAAEDYVEQLEALFGGRLYIELSRRGD
EVEKAAEDALIDLAYARALPIVATNPANFVEPQFHPAHDAMLCIAQSAYVESEDRRVSSP
EAWLKPAEAMEDAFSDLPEAIRNTLVVAQRCAFMAPKRKPILPSLAGDREGEAAQLKADA
HAGLAARLAHYPDLSDEDREAYVTRLDFEVDVITQMGFPGYFLIVADFIKWAKAHDIPVG
PGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQ
EKYGRDTVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERALNG
VAELMTEYKQDDGVRRLFDMARQLEGLPRHSSTHAAGVVIGDRPLDQLVPLYRDPRSDMP
VTQFDMKYVETAGLVKFDFLGLKTLSVLKEARRLLALRGVDVDLDALAWDDEEVYALLQR
GETVGVFQLESEGMRRTLSAVKPTNFGDIIALVALYRPGPMDNIPLFGARKNGREAIAYP
HPLLEGILAETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKVQAEMDAQRETFVK
GCGEHNQIAPKAANELFDLIDKFAGYGFNKSHAAAYALLSYQTAWLKAHYPHEFFAASMS
FDSHQTDKLSIFIDDMRRLDVGISPPSVNDSEADFSVGRSDEGLTVRYALGALKGVGEKA
MEALVAERAKGDFVSLDDFASRIDPKLLNRRQIEALAAAGAFDCIEPDRPRAFAGAESLL
ACANSSAHERSTGQGGLFGGDIAIAPALQLPAAEPWTLAERMTREKDAFGFYFSSHPVEQ
YEAIVSARGARSYGDICDNVEMTPGTRIPMVMAAMVESARPRVSQRGNRFLNLTLSDRSG
QFQSSCFDEIAGKTLEALAAEGGCAMLSVELDLLEGEETPRVTVRGAQSLADMAATAALQ
LTCRVDTSAAIEDIARLLVKRDDAKGRVIVTTIDPLTDDEIRIELGRGFALGPDTVSRLD
MVAGVTQPALSLVAPREFRAR
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggcctacagcccctttgttcccctacgcgtcttttccagttttaccatgctggagggg
gcgatcgagcccaaggcgattgcgaaggccgcgcgcgagcgcgggtttccggcaatcgcc
gttgccgaccgcaacgggctttacggcgtcatggcatttggcgaggcgtgcaaggcggcg
ggggtgcagccgatcgtcggaaccctgctcagcgtcgcgcggcccgggcagcggatagcg
aacggcgcgccgctgatcgactggctcgcactctatgcgcaggatgatgcgggatatgac
aatctgtgcgcgctggtgtcggcggcgcacctcggccgcccggtcgagcaggacccgcat
gtgctgctgtctgacatagcgggcaaaaccgatgggttgatctgcctgaccggcggcggc
gaaggcgcgctcgcgcggttgctcgcgggcgagcagaagagcgcggcagaggattatgtc
gagcagttggaggcgctattcggcgggcggctctatatcgagctgtcgcggcgcggcgat
gaggtcgagaaggcggccgaggatgcgctgatcgatctggcctatgcgcgcgcgctgccg
atcgtcgcgaccaacccggcgaatttcgtcgagccgcagttccatcccgcacacgatgcg
atgctgtgcatcgcgcagtcggcctatgtcgagagcgaggatcgccgcgtttcgagcccc
gaagcgtggctcaagcccgccgaggcgatggaggacgctttctccgatctgcccgaggcg
atccgcaacacgctggtcgtcgcgcagcgctgcgccttcatggcgccgaagcgcaagccg
atcctgcccagccttgcgggcgatcgcgagggcgaagcggcgcaattgaaggccgacgcg
cacgcggggctggcggcgcggctcgcgcactatcccgacctctccgacgaagaccgcgag
gcctatgtcacgcggctcgatttcgaagtcgacgtcatcacccagatgggctttccggga
tactttctgatcgttgccgacttcatcaaatgggcgaaggcgcacgatatcccggtgggg
ccggggcgcgggtcgggtgcgggcagcgtcgtcgcctgggcacttacgatcaccgacctc
gatcccttgaagctcggcctgctgttcgagcgcttcctcaaccccgagcgcgtgtcgatg
cccgacttcgacatcgatttctgtgaaacgcggcgcggcgaagtgatccgctatgtccag
gagaaatacggccgcgataccgtcgcgcagatcatcaccttcggtaagctgaaggcgcgt
gcggtgctcaaggacaccgggcgcgtgctccagatgagctatgggcaggtcgaccggctg
gcgaagctggtgccgaaccatccgaccgatccgtggacgctcgaacgcgcgctcaacggc
gttgccgagctgatgaccgaatataagcaggacgatggggtacggcgcctgttcgacatg
gcccgccagctcgaaggcctaccgcggcacagctcgacccacgccgcaggggtggtgatc
ggcgaccgccctctcgaccagctcgtcccactctatcgcgacccgcgctcggacatgccg
gtgacccagttcgacatgaaatatgtcgagaccgcagggctggtgaaattcgactttctg
ggcctcaagacgctgtcggtgctgaaggaggcacgccgcctgcttgcgctgcgcggagtc
gacgtcgatctcgacgcgctcgcttgggacgacgaggaagtctatgcgttgctccagcgc
ggcgagaccgtcggggtgttccagctggaatccgaagggatgcggcgcacgctttcagcg
gtgaaaccgaccaatttcggcgacatcatcgcgctcgtcgcgctctatcgccccggtccg
atggacaatatcccgctgttcggcgcgcgcaagaacgggcgcgaggcgatcgcctatccg
catcctttgctcgagggcatcctcgccgaaacctacggcatcttcgtctatcaggaacag
gtgatgcaggccgcgcagatactggcgggctacagcctcggcggtgccgacctgctacgc
cgcgcgatgggcaagaaggtccaggccgagatggacgcgcagcgcgaaaccttcgtcaaa
ggctgcggcgagcataaccagatcgcgccgaaggccgcgaacgagctgttcgatttgatc
gacaagttcgcgggttatggcttcaacaagagccatgcggcagcctacgccttgctatcc
tatcagacggcgtggctgaaagcgcattatccgcacgaatttttcgccgcgtcgatgtcg
ttcgatagccaccagaccgacaagctgtctatcttcatcgacgacatgcgccggctcgac
gtcggaatctcgccgccgtcggtcaacgacagcgaggccgatttctcggtcggacgcagt
gatgaggggctgacggtgcgctacgcactcggcgcgctcaagggggtgggcgagaaggcg
atggaggcgctcgtcgccgaacgcgcgaagggcgatttcgtcagccttgacgattttgcg
agccggatcgaccccaagctgctcaaccggcggcagatcgaggcgctggcggcggcgggg
gcgttcgactgtatcgagcccgaccgcccgcgcgcctttgccggcgccgaaagcctgctc
gcctgcgcgaacagctcggcgcacgaacgttcgacggggcagggcggcctgttcggcggc
gacatcgcgatcgcgcccgcgctgcaactgcccgccgccgaaccatggacgctcgccgag
cggatgacgcgcgagaaggacgccttcggcttctatttctcgtcgcatccggtcgagcaa
tatgaagcgatcgtctcggcgcgcggcgcgcgctcctatggcgatatctgcgacaatgtc
gaaatgacgccgggaacgcgcatcccgatggtgatggcggcgatggtcgaaagcgcgcgc
ccgcgcgtgtcgcagcgcggcaaccgcttcctcaacctgacgctgtcggaccgcagcggc
cagttccagtcgagctgcttcgacgaaatcgccggaaagacgctcgaggcgctggcggcc
gagggcggctgcgcgatgctgtcggtcgaactcgatctgctcgaaggcgaggaaacgccg
cgggtcaccgtacgcggtgcgcagtcgctggccgatatggctgcgaccgccgcgctccag
ctgacctgccgcgtcgacacgtcggcggcgatcgaggacatcgcgcggctgctcgtcaag
cgcgacgatgcaaagggccgcgtgatcgtcactacgatcgatccgctgaccgatgacgag
atccgtatcgaactcggccgcggcttcgcgctcggccccgacacggtatcgcggctcgac
atggtcgcgggcgtgacccagcccgcgctgtcgctcgtcgcgccgcgcgaattccgggcg
cgctaa
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integrated database retrieval system
