Sphingopyxis sp. PAMC25046: E5675_17540
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Entry
E5675_17540 CDS
T06315
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sphx
Sphingopyxis sp. PAMC25046
Brite
KEGG Orthology (KO) [BR:
sphx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphx03032
]
E5675_17540
03400 DNA repair and recombination proteins [BR:
sphx03400
]
E5675_17540
Enzymes [BR:
sphx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E5675_17540
DNA replication proteins [BR:
sphx03032
]
Prokaryotic type
DNA Topoisomerases
E5675_17540
DNA repair and recombination proteins [BR:
sphx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E5675_17540
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QCB56056
UniProt:
A0A4P7RZ07
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All DBs
Position
3724021..3725031
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AA seq
336 aa
AA seq
DB search
MAATRLVHVDDSLPGISRERSGVGWRYRDAKGKIIRDRDEIDRLNAIALPPAYEDAWFCP
APNGHILATGYDARGRKQYRYHPDFRMAREADKYDRCAAFGHALPLLRARLADDLARRTL
CSERVVAAVVRLLDLAALRIGNEQYVAANKSFGATTLRQRHAKASGKTLRLQYVAKGGAK
RDVTISDRSLSTLVRRLQDLPGQKLFQYEDADSLCAVGSDDVNAYIREAMGDEFSAKHFR
TWSASVEAFAFLYDAPEPPTLKAMLEHVAGRLGNTPAIARKAYVHPAMIAAAQERTAFAA
AVGTLPRATRYLSRYERGFLTYLERAPDAAALLRSA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaacccgccttgtccatgtcgacgacagtctgcccgggatcagccgcgagcgt
tcgggggtcggctggcgctatcgcgatgccaagggcaagatcatccgcgaccgcgacgaa
atcgaccgcctcaacgcgatcgcactgccgccggcttacgaggacgcctggttctgcccg
gcgccgaacggccatatcctcgcgaccggctacgacgcgcgcgggcgcaagcaatatcgc
tatcatcccgacttccggatggcgcgcgaggccgacaaatatgaccgctgcgccgccttc
ggccatgcgctgccgctgctccgcgcgcgccttgccgacgatctcgcccgccggacgctc
tgctcggaacgcgtcgtcgcggcggtcgtgcgcctgctcgacctcgccgcgctgcgcatc
ggcaacgagcaatatgtcgctgcgaacaagagctttggcgcgacgacgctgcgccagcgc
catgcaaaggcttcgggcaagacgttgcgcctgcagtatgtcgccaagggcggcgcgaaa
cgcgacgtgacgatcagcgaccgcagcctttcgacgctggtgcgccggttgcaggatctg
ccggggcagaagctttttcagtatgaggatgcggacagcctgtgcgcggtcggatcggac
gatgtgaatgcctatatccgcgaggcgatgggcgatgagttcagcgccaagcatttccgt
acctggtcggccagcgtcgaagccttcgccttcctttacgacgcgcccgagccgccgacg
ctgaaggcgatgcttgagcatgtcgccggccgcctcggcaacacacccgccatcgcacgc
aaggcctatgtccatccggcgatgatcgccgcagcgcaggagcgcacggccttcgcggcg
gccgtcgggacgctgccccgcgcgacgcgctatctttcgcgttacgaacgcggatttttg
acctatctggagcgggcgccggacgcggctgccttgctgcgctccgcttga
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