Sphingopyxis sp. PAMC25046: E5675_18920
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Entry
E5675_18920 CDS
T06315
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sphx
Sphingopyxis sp. PAMC25046
Pathway
sphx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E5675_18920 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphx03021
]
E5675_18920 (rpoC)
03400 DNA repair and recombination proteins [BR:
sphx03400
]
E5675_18920 (rpoC)
Enzymes [BR:
sphx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E5675_18920 (rpoC)
Transcription machinery [BR:
sphx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E5675_18920 (rpoC)
DNA repair and recombination proteins [BR:
sphx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E5675_18920 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Biotin_lipoyl
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QCB56298
UniProt:
A0A4P7RZH6
LinkDB
All DBs
Position
complement(4032247..4036530)
Genome browser
AA seq
1427 aa
AA seq
DB search
MNQLTNFMNPVAKPETFDMIKIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVLEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAIRVLLENLDLEQERVDLMEELATTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLEREGEPGEGMLLADMAEVHQALFT
GAVTLHTKVVSRVPQTDEQGNEYLKRFETTPGRMLIGECLPKSHTVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKETVLFADAIMALGFRNAFKAGISFGKDDMIIPASKEGMVDETRALV
KDFEQQYQDGLITQQEKYNKAIDAWSQCGDKVANAMMDEIRATPKLDDGRLAPINSIYMM
AHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVIEEDCGTERGMEMRAIIQGGSTIASLGERILGRTTL
EDVADKDGNIIAPVGTLLDEATTQRIEDAEVQSVKIRSPLVCEATLGVCGKCYGRDLARG
TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSNAEAISDGTIEYRDMATIV
DQRGRRLALSRSGEIAIIDSEGRERATHKLPYGAQIMHKDGEKVKKGDRIAEWDPFTMPL
ITEKQGVVKYQDLADGKTLVEQVDEATGIAQRVVIEYRSAGRAKKEDLQPRLTLLDDESG
EAARYLLAVGTMLSVEDGQEVQAGDVLARVSREASKTRDITGGLPRVAELFEARIPKDNS
VIAKISGRIEFVKDYKAKRKIAIVPEEGDPIEYLIPKSKVLEVQEGDQVKRGDALISGSP
NPHDILDVMGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITSGGDTTLL
PGEQLDYLEMMEYNAKLPKNGVPAEGRPVLLGITKASLQTRSFVSAASFQETTRVLTEAS
VQGKIDSLQGLKENVIVGRLIPAGTGAAMNRVRVTASSKDAALRAAMRAANQEHLIAPAT
AAEEHEAELAQGPEAAMGDDPLGKVQGEDFTSDDVMVEERPEGEGEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagcttaccaacttcatgaacccggtcgcgaagcccgaaaccttcgacatgatc
aagatcggcatcgcgagccccgagcgcatccgctcgtggtcgttcggcgagatcaagaag
cccgaaacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atctttggcccgatcaaggattatgaatgcctgtgcggcaagtataagcgcatgaaatac
aagggcatcgtctgcgagaagtgcggtgtcgaagtcacggtgaccaaggtccgccgcgag
cgcatgggccatatcgagctcgccgcgcccgtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctgaagcagctcgagcgcgtgctgtat
ttcgaagcctatatcgtccttgagcccggcctgaccccgctcgaaaagttccagcttctg
accgaagacgaactgctcgacgcgcaggacgaatatggcgaagacgctttctcggccggc
atcggcgccgaggcgatccgcgtgctcctcgaaaatctcgatctcgagcaggaacgcgtc
gacctgatggaagaacttgcgaccaccaagtcggagctcaagcccaagaagatcatcaag
cgcctcaaggtcgtcgaaagcttcatcgattcgggcaaccgtcccgagtggatgatcctc
gaagtcgtccccgtgatcccgcccgaactgcgcccgctggtgccgctcgatggcggccgc
ttcgcgacgtcggatctcaatgacctgtatcgccgcgtgatcaaccgcaacaaccgtctg
aagcgcctgatggaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagccgtcgacgcattgttcgacaacggccgccgcggccgcacgatcacgggtgcg
aacaagcgtccgctcaagtcgctctcggacatgctcaagggcaaacagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggccgctcggtcatcgtgaccggcccc
gaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaagccg
ttcatctacgcgcgcctcgacgccaagggtctgtcgatgaccctgaagcaggcgaagaag
tgggtcgaaaaggaacgcaaggaagtctgggacatcctcgacgaagtcattcgcgagcac
ccggtcctgctgaaccgcgccccgacgcttcaccgcctcggcatccaggcgttcgagccc
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgcgctgcgttcaacgcg
gactttgacggggatcagatggcggtccacgtgccgctctcgctggaagcgcagctcgaa
gcgcgtgtgctgatgatgtcgaccaacaacatcctcagccccgcgaacggcaagccgatc
atcgttccgtcgcaggatatggtcctcggtctctattatctctcgctggagcgcgaaggc
gaaccgggcgagggcatgctgctcgccgacatggccgaagtgcaccaggcgctgttcacc
ggcgcggtgacgctgcacaccaaggtggtcagccgcgttccgcagaccgacgagcagggc
aacgagtatctcaagcgcttcgagaccactccgggccgcatgctgatcggcgaatgcctg
ccgaagtcgcacaccgtgcccttcgacgtcgtcaaccgccttctgaccaagaaggaaatc
ggcgacgtgatcgaccaggtctatcgccacaccggccagaaagagaccgtgctgttcgcc
gacgccatcatggcgctgggcttccgcaacgcgttcaaggccggcatctccttcggcaag
gatgatatgatcatcccggcgtcgaaggaaggcatggtcgacgaaacccgcgcgctggtg
aaggatttcgagcagcagtatcaggacggcctgatcacgcagcaggaaaagtacaacaag
gcgatcgatgcgtggtcgcagtgcggcgacaaggtcgcgaacgcaatgatggacgaaatc
cgtgcgacgccgaagctcgacgacggccgtctggccccgatcaactccatctacatgatg
gcgcactcgggtgcccgtggttcgcaggcacagatgaagcagcttgccggcatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgttctcgagtatttcaactcgacgcacggtgcgcgtaagggtctcgccgat
acggcgctcaagacggcgaactcgggctacctgacccgccgtctggtcgacgtgtcgcag
gactgcgtcgtgatcgaggaagattgcggcaccgaacgcggcatggaaatgcgcgcgatc
atccagggcggttcgacgatcgcctcgctgggcgaacgcatcctcggccgcaccacgctc
gaagacgtcgccgacaaggacggcaacatcatcgctccggtgggcacgttgctcgacgaa
gcgacgacgcagcggatcgaggacgccgaagtccagtcggtcaagatccgctcgccgctg
gtctgcgaagcgacgctcggcgtttgcggcaaatgctatggccgcgacctcgcgcgcggt
acgccggtgaacatcggtgaagctgtcggcgtcatcgccgcgcagtcgatcggtgaaccc
ggcacgcagctgacgatgcgtaccttccacatcggtggtgcggcgcaggtcaacgagcag
tcgaacgccgaagcgatttcggacggcacgatcgaatatcgcgacatggcgacgatcgtc
gaccagcgcggccgccgtctggcgctgtcgcgttcgggcgaaatcgcgatcatcgacagc
gaaggccgcgagcgcgcgacgcacaagctgccctatggtgcgcagatcatgcacaaggac
ggcgagaaggtgaagaagggcgaccggattgccgaatgggatccgttcaccatgccgctg
atcaccgaaaagcagggcgtcgtgaagtatcaggatctggccgacggcaagacgctggtc
gaacaggtcgacgaagcgacgggcatcgcccagcgcgtcgtgatcgaatatcgctcggcg
ggccgcgccaagaaggaagacctgcagccgcgcctgaccctgctcgacgacgagtcgggc
gaagcggcccgctacctgctcgcggtcggcacgatgctgtcggtcgaagacggtcaggaa
gtgcaggccggcgacgttctggcgcgtgtcagccgcgaagcgtcgaagacgcgcgacatc
accggcggtctgccgcgcgttgccgagctgttcgaagcacgcattccgaaggacaacagc
gttatcgcgaagatcagcggccgcattgaattcgtcaaggattacaaggcgaagcgcaag
atcgcgatcgttccggaagaaggtgatccgatcgaatacctcattcccaagtcgaaggtg
ctggaagtgcaggaaggcgaccaggtcaagcgcggcgatgcgctgatttcgggctcgccg
aacccgcacgacatccttgatgtgatgggcgtcgaggcgctggcagaatatctggtagca
gaaatccaggaagtctatcgactgcagggtgtgaagatcaacgacaagcacatcgaggtg
atcgttcgccagatgctgcagaaggtcgagatcacgtcgggcggcgacaccacgctgctg
ccgggcgaacagctcgattatctggagatgatggaatataacgccaagctgccgaagaat
ggcgttcccgcggaaggccgtccggtcctcctcggcatcaccaaggcgtcgctgcaaacc
cgcagcttcgtttcggccgcatccttccaggagacgacccgcgtcctcaccgaagcatcg
gtgcagggcaagatcgactcgctgcagggcctcaaggaaaatgtcatcgtcggtcgcctc
atcccggcgggcactggcgcggccatgaaccgcgtccgcgtcaccgcctcgtcgaaggat
gccgcgctgcgcgccgccatgcgcgccgcgaaccaggagcatctgatcgcgccggcgacc
gccgccgaagagcatgaagccgaactggcgcagggccccgaagccgcgatgggtgacgat
ccgctcggcaaggtgcagggcgaggacttcacgtcggacgacgtgatggtcgaagaacgt
cccgaaggcgaaggcgaggaataa
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