Sphingopyxis sp. PAMC25046: E5675_20335
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Entry
E5675_20335 CDS
T06315
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sphx
Sphingopyxis sp. PAMC25046
Pathway
sphx03410
Base excision repair
sphx03430
Mismatch repair
sphx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
E5675_20335 (recJ)
03430 Mismatch repair
E5675_20335 (recJ)
03440 Homologous recombination
E5675_20335 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphx03400
]
E5675_20335 (recJ)
DNA repair and recombination proteins [BR:
sphx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
E5675_20335 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
E5675_20335 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E5675_20335 (recJ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF6986
VEK-30
Motif
Other DBs
NCBI-ProteinID:
QCB56554
LinkDB
All DBs
Position
complement(4296778..4298544)
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AA seq
588 aa
AA seq
DB search
MSDAALGITRSIAGQPWHWRRASADMGSENLAPDDLVTQLLLARGVARDDLDRQRVPTLR
GFMPDPSLFRDMDAAAARLADAVEKREAVTIFGDYDVDGATSAALLVRLLRGLGLPVGAY
IPDRLMEGYGPSGAALVKIGEAGSRLVVTVDCGAQAFDAIAEAKAAGVEVIVVDHHQCAT
TLPDALALVNPNRLDEEADAAIHGNLAAVGVAFLLGAALLRTLRARGFFVDRDEPALIEL
LDLVALGTVADVARLTGFNRALVTQGLKVMARRGNTGLAALMDAARLTKPPSASDMGFAL
GPRINAGGRVGKSDLGVRLLTTSDPQEAAEIAAELNRLNEERRAIEAAVLEQAIEASAAC
GNAPVAIVAGEGWHPGVIGIVAGRLKERLHRPAIVIAVDEEGVGKGSGRSISGVDLGAAI
LAAKETGLLVAGGGHAMAAGLTVEKGKVDALGAFLNDRLAADVERASGDKALLIDAVLAP
RGVSPLWCDAIESAGPYGAGWPAPRVATGPVRIVESGIVGTDHVRLIVSGDDGARFKAIA
FRSAETELGQALLRARGRKLWLAGRAKRDDWGSRPAAELHLEDAAWAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgcggcgctcggaatcacgcgctcgattgcagggcagccttggcattggcgg
cgggcgagtgccgatatgggcagcgaaaatctcgcgcccgatgatctcgtcacgcaattg
ctgctcgcgcgcggcgttgcgcgcgacgatctcgaccggcagcgcgtaccgacgctgcgc
ggcttcatgcccgatccctcgcttttccgggacatggatgccgccgcggcacggctcgcc
gacgcggtcgaaaagcgcgaggccgttacgatcttcggcgattacgacgtcgacggcgca
acctcggcggcgctgctcgtgcggctgctgcgcgggctcggcctccccgtcggcgcctat
atccccgaccgcctgatggaaggctatggcccgtcgggcgccgcgctcgtcaagatcggc
gaggcgggatcgaggctggtcgttacggtcgattgcggcgcgcaggcgttcgatgcgatc
gccgaggccaaggcggcgggagtcgaggtgatcgtcgtcgaccatcaccagtgcgcgacg
acgctgcccgatgcccttgccctcgtgaaccccaaccggctcgatgaggaagccgatgcg
gcgatccacggcaatctcgccgcggtcggggtcgccttcctgctcggcgccgcgctgctc
cgcacgcttcgcgcacgcggcttttttgtggaccgtgacgagcccgcgctgatcgaactg
ctcgacctcgtcgcgctcgggaccgtcgccgacgtcgcgcgcctcaccggattcaaccgg
gcgctcgtgacgcaggggctgaaggtgatggcacggcgcggcaacacgggccttgcggcg
ctgatggacgcggcgcggctcaccaagccgccgagcgcaagcgacatgggctttgcgctc
ggcccgcggatcaacgccggcgggcgcgtcggcaagtccgacctcggcgtgcggctgctc
acgacgagcgacccgcaggaagcggcggagatcgcagccgagctcaaccggctgaacgaa
gaacgccgcgcgatcgaggcggcggtgctcgaacaggcaatcgaagcgagcgccgcttgc
ggcaacgcacccgtcgcgatcgtcgcgggcgagggttggcatccgggcgtcatcggcatc
gtagccgggcgcctcaaggaaagattgcatcggcccgcgatcgtgatcgcggtcgacgag
gagggcgtcggcaagggatcggggcgctcgatttcgggcgtcgaccttggcgccgcgatc
ctcgccgcgaaggaaacgggcctgctcgttgcgggtggcggccatgcgatggcggcgggg
ctgaccgtcgaaaagggcaaggtcgatgcgcttggcgcgttcctcaatgaccgcctcgcc
gccgacgtcgagcgcgcgagcggcgacaaggcgctactgatcgacgcggtgcttgcgcca
cgcggcgtttcgccgctctggtgtgatgcgattgaaagcgcgggcccctatggcgccggc
tggcccgcgccgcgcgtcgcgaccggcccggtgcgaatcgtcgaatcggggatcgtcggc
accgatcatgtccgcctgatcgtgtcgggcgacgatggcgcgcgcttcaaggcgatcgct
tttcgtagtgccgagaccgagctgggacaggctttgctccgcgcgcgcgggcgcaaatta
tggctcgcgggccgcgcaaaacgggacgactggggcagccgccccgccgccgaattgcat
ctcgaggacgcggcctgggccgactag
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