KEGG   Sphingopyxis sp. PAMC25046: E5675_20355
Entry
E5675_20355       CDS       T06315                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
sphx  Sphingopyxis sp. PAMC25046
Brite
KEGG Orthology (KO) [BR:sphx00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphx03400]
    E5675_20355
Enzymes [BR:sphx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     E5675_20355
    5.6.2.6  RNA 3'-5' helicase
     E5675_20355
DNA repair and recombination proteins [BR:sphx03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    E5675_20355
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2 TRH
Other DBs
NCBI-ProteinID: QCB56557
LinkDB
Position
4303216..4305633
AA seq 805 aa
MPLPAPFTDWFAARGWRLRRHQADMLGAGTRGEHALLVAATGAGKTLAGLLPSLVDLAQN
PSDRLHTLYVSPLKALAADVERNLLGPIAEMELDISVESRSGDTSSDKKARQRSRPPNIL
LTTPESLSLLLSYPDSFTMFAHVKTLVIDEIHAFAPGKRGDLLGLAMARLQAIAPGLRRV
GLSATIADPVQYAGWLAPDADAGTVTIVEGEAGADPDIEILLPEGAVPWAGHSGRWAVHQ
VMEAIARNRTTIIFCNTRGLAELIFQELWKVNDLSLPIAIHHGSLDREARERAEAAMAEG
RLRALVATASLDLGLDWGDVDCVIQMGAPKGSSRLLQRIGRANHRLDEPSRALIVPGNRF
EYLEAQAALDAVEAGERDADRFRPGALDVLAQHVMALACAAPFREDELLAEIRSAAPYRW
IDAEVFARLLGFVRDGGYALKSYDRFRRLAPDGPGRWRIAHPRLAAQHRLNAGIIVEAPM
ADVRFKNGRRLGKVEEYFASTLSPGDTFAFAGLSLEVEAIRDTDLIVRATTRPARIPSYM
GARLAISTRLADRVRGFLADPASWQRFPEDVRFWLEMQALRSALPRPGELLVETFPHEGH
HYLVCYPFEGWNAHQSLGMLITKRMERAGLQPLGFVASDYAIAIWSLRPVAHPQNLFDAE
ILSDEFVEWVERSHLLKRAFREVAVIGGLIERQHPGKRKTGKQVTFSTDLIFDVLRKYEP
DHLLLEAAWADARERLTDVARLGDLLDRAAGTMLHRTLDRISPLAIPVLVLIGRENVAAS
DLDDMLLGELADALAEEAMRVNPQE
NT seq 2418 nt   +upstreamnt  +downstreamnt
atgccgcttcccgcccctttcaccgactggttcgccgcgcgcgggtggcggctccggcgg
catcaggccgatatgctcggcgcgggaacgcgcggcgaacatgcgctgctcgtcgcggcg
acgggcgcgggcaagactttggcggggcttttgccgagcctcgtcgatctcgcgcaaaac
ccgtcggaccggctccacacgctctatgtgtcgccgcttaaggcactcgcggccgatgtc
gaacgcaacctcctcggcccgattgccgagatggagctcgacatcagcgtcgaaagccgc
agcggcgacacaagttcggacaagaaggcgcggcagcgcagccgcccgccgaacatattg
ctgacgacgcccgaatccctgtcgctgctgctgtcctatcccgacagcttcacgatgttc
gcgcacgtaaagacattggtgatcgacgagatccacgcctttgcaccgggcaagcgcggc
gatctgctcggcctcgcgatggcgcggctgcaggcgatcgcaccggggctgcgccgtgtc
gggctgtcggcgacgatcgccgatccggtgcaatatgccggctggctcgcccccgacgcc
gacgccggcacggtcacgatcgtcgaaggcgaagcgggcgccgaccccgacatcgagata
ttgctgcccgagggcgccgtgccgtgggcgggacactcggggcgctgggcggtgcatcag
gtgatggaggcgatcgcaaggaatcgcacgacgatcatcttctgcaacacgcgcgggctc
gccgaactgatctttcaggagctgtggaaggtcaacgacctgtcgctcccgatcgcgatc
caccacggcagcctcgaccgcgaagcgcgcgagcgcgcggaggccgcgatggccgaggga
cggctgcgcgcgctcgtcgcgaccgcgagcctcgacctcgggctcgactggggcgatgtc
gactgcgtgatccagatgggggcgcccaaggggtcgtcgcggctgctccagcgcatcggc
cgcgccaaccaccggctcgacgaaccgagccgcgcgctgatcgtgccgggcaaccgcttc
gaatatctcgaagcgcaggcggctctcgatgccgtcgaagcgggcgagcgcgacgccgac
cgcttccgccccggcgcgctcgacgtgctcgcgcagcatgtgatggcgctcgcctgcgcg
gcgccgttccgcgaggacgaactgctcgccgaaatccgaagcgcggcgccctatcggtgg
atcgatgcggaggttttcgcacggctgctcggtttcgtgcgcgatggcggctatgcgctc
aaaagctatgaccgcttccgccgcctcgcccccgatgggccgggacgctggcggatcgcg
catccccggctcgccgcgcagcaccggctcaatgccgggatcatcgtcgaggcgccgatg
gccgacgtccgcttcaagaacggccggcggctcggcaaggtcgaggaatatttcgccagc
acgctgtcgccgggcgatacctttgcctttgccggtttgagcctcgaggtcgaggcgatc
cgcgacaccgacctgatcgtccgcgcgacgacgcgccccgcgcgcatcccgagctatatg
ggggcgcggctcgcgatttcgacgcggctcgccgaccgggtgcgcggcttccttgccgat
cctgcgagctggcagcgctttcccgaggatgtgcgcttctggctggagatgcaggcgctg
cgctcggcgctgccgcggccgggcgaactgctcgtcgagaccttcccgcacgaagggcat
cattatctcgtctgctatccgttcgaaggctggaacgcgcaccagtcgctcggcatgctg
attaccaagcggatggagcgcgccgggctgcaacccttgggcttcgtcgcctccgactat
gcgatcgcgatctggtcgctgcggcccgtggcacacccccaaaatctgttcgatgccgag
attttgtccgacgaattcgtcgaatgggtcgaacggtcgcatctgctgaagcgcgcgttc
cgcgaggtcgcggtgatcggcgggctgatcgagcgccagcatccgggcaagcgcaagacg
ggcaagcaggtgaccttttcgaccgacctgatcttcgacgtgctgcgcaaatacgaaccc
gaccatctgctgctcgaggccgcgtgggccgacgcgcgcgagcggctgaccgacgtcgcg
cggctgggcgacctgctcgaccgcgcggcggggacgatgctgcaccgaacgctcgaccgg
atcagcccgctcgccatccccgtgctggtgctgatcgggcgcgaaaatgtcgccgcgtcc
gatctcgacgacatgctgctcggcgaactcgccgatgcgctggccgaggaggcgatgcgc
gttaacccgcaggaatga

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