Sphingorhabdus sp. YGSMI21: CHN51_04500
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Entry
CHN51_04500 CDS
T05308
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy03030
DNA replication
sphy03410
Base excision repair
sphy03420
Nucleotide excision repair
sphy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHN51_04500
03410 Base excision repair
CHN51_04500
03420 Nucleotide excision repair
CHN51_04500
03440 Homologous recombination
CHN51_04500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphy03032
]
CHN51_04500
03400 DNA repair and recombination proteins [BR:
sphy03400
]
CHN51_04500
Enzymes [BR:
sphy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CHN51_04500
DNA replication proteins [BR:
sphy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CHN51_04500
DNA repair and recombination proteins [BR:
sphy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CHN51_04500
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHN51_04500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DprA_N
HHH_5
HHH_2
HHH
Motif
Other DBs
NCBI-ProteinID:
ATW05387
UniProt:
A0A2D3RJK7
LinkDB
All DBs
Position
complement(942513..945317)
Genome browser
AA seq
934 aa
AA seq
DB search
MTDPTDSKPNHLYLVDGSAYIFRAYHRLPPLTNVRGEPVGAVYGYTTMLWKLADELNKAD
GPTHMAVVLDKAGTSFRNDLYDQYKANRPEAPEDLKPQFPMIRDATRAFSLPLIEEENVE
ADDMIASYTKAALAEGWKVTIVSSDKDLMQLIEPHDDSRVDMLDTMKNARMNRATVEEKF
GVGPEKLGDVLGLMGDSSDNIPGVPGIGPKTASKLINEYGDIESVLAAAPEMKKSKMRDN
LVEFADQARLSRELVTLREDCPLPDTLESFLIQDIPDGPLREFLADHGFNSLLRKLGGDG
HAEPQNPDVAEEAGTPVAAKLPDAPAIDRSTYECVQDIDTLDQWIARATAQGVCAVDLET
DSLESVTARIVGVCLATGPNEACYVPLGHGSGDMFGETPQQIGLEDALAKLKPLLEDDAV
LKVGQNLKYDMGVLAQHDISIAPFDDTLVMSFNLDAGLHGHGMDELSKLHLGHECISFKS
LTGTGKKAIGFAEVPLDKATEYGAEDADVTLRLWEILRLRMVPERATRVYQMVDRPLVPV
IAGMEASGVLVDREELARLSKTFAEEMEKLEADIHELAGESFSIGSPKQLGEILFGKLGL
KGGKKGKSGQYSTDVTVLERLAGDGEPIAQKVVDWRQLAKLKSTYTDALQEQINPETGRV
HTSYSLSGAQTGRLSSTEPNLQNIPIRTEIGRQIRQAFVAAPGNVILAADYSQIELRLAA
HIADVETLKEAFANGEDIHNRTARELFGAEDRDARARAKTINFAILYGISRWGLAKRLEV
DPDEAQAMIDTYFERFPGINQYISKTLQSVRETGYTETLFGRKTWFERIKSPNQAERQGS
ERAAINAPIQGTSADIIKRAMARMLPALAEAGLDKVRMLMQVHDELVFELPEGDVEAAST
VIRTVMSGAAEPAVKLSVPLDVDIGTGKSWDEAH
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgacggaccctacagacagcaaacccaaccatctctatcttgttgacggctcggcctat
attttccgtgcctatcaccgcctgccgccgctgaccaatgtccgcggcgaaccggtcggc
gcggtctatggctatacgacgatgttgtggaagctcgccgacgagctgaacaaggccgac
ggtccgacccatatggcggtggtgctggacaaggcgggaaccagtttccgcaacgatctc
tatgatcagtataaggccaaccggccggaggcaccggaggatctgaagccgcaattcccg
atgatccgcgatgccacgcgggcattctcgctgccgctgatcgaggaagaaaatgtcgag
gccgacgacatgatcgcctcttataccaaggcggctctggccgagggctggaaggtcacg
atcgtctcgtccgacaaggatctgatgcagctgatcgagccgcatgacgacagccgcgtc
gacatgctcgatacgatgaagaacgcccggatgaaccgcgccacggtcgaggagaaattc
ggcgtcgggccggagaagctgggcgatgtgcttggcttgatgggcgacagttcggacaat
atccccggcgtgccgggcatcgggccgaagacggcgtccaaattgatcaacgaatatggt
gatatcgaaagcgttctcgccgccgcgccggagatgaagaaatccaagatgcgcgacaat
ttggtcgaatttgccgatcaggcgcggctgtcgcgcgagctggtgaccctgcgcgaggat
tgcccgctgcccgatacgctggagagtttcctgatccaggatattcccgatgggccgctg
cgcgaatttctggcggatcacgggttcaacagcctgctccgcaaactgggtggcgacggc
catgccgaaccgcaaaatcccgatgtggcggaggaagccggtactccggttgccgcaaaa
ttgccggacgcaccggcgatagatcgcagcacttatgaatgtgtgcaggacattgatacg
ctggaccagtggatcgcgcgggcaacggcgcaaggcgtctgcgcggtggatctggaaacc
gacagtctcgaaagcgtcaccgcgcgcatcgtcggcgtctgtctggccaccggtcccaac
gaggcctgctatgtcccgctcggccatggcagcggcgacatgttcggcgagacgccgcag
cagatcgggctggaggatgcgctggcgaagctcaagccgctgctcgaggatgatgcggtg
ctgaaagtcggtcagaatctgaaatatgacatgggcgtactggcccagcatgatatcagc
atcgcgccttttgacgacactttggtgatgagtttcaatctcgatgccggcctgcatggt
catggtatggacgaactttccaagctgcatctcgggcacgaatgtatcagcttcaagtcg
ctcaccggcaccggcaagaaggcgatcggctttgccgaagtgccgctcgacaaggcgacc
gaatatggcgcggaggacgccgatgtcacgctgcgcctgtgggaaatattgcggctgcgg
atggtcccggaacgggcgacgcgtgtctatcagatggtcgaccgtccactggtgccggtg
attgccgggatggaagccagcggcgtgctggtcgaccgcgaggaactggcgcgattgtcc
aagacatttgccgaggaaatggaaaagctggaagcggatatccacgaactggcgggcgaa
tccttttccatcggcagtcccaagcagctgggtgaaatcctgttcggcaagctcggtctg
aagggcggcaagaagggtaagtctggtcaatattcgaccgatgtcacggtgctcgaacgg
ctggccggcgatggtgaaccgatcgcgcaaaaggtggtcgactggcggcagctggcgaag
ctgaaatccacctataccgatgcgctgcaggagcagatcaatccggaaaccggacgggtg
cacacgtcctacagcctgagcggcgcgcagaccggtcggctgtcctcgaccgaacccaat
ttgcagaatatcccgatccgcaccgagatcgggcggcagatacggcaggcctttgtcgct
gcaccgggcaatgtcattctcgccgccgactatagccagatcgaactccggctggcggcg
catatcgccgatgtagagacattgaaggaggcgtttgcgaacggcgaggatatccataac
cggaccgcgcgcgagctgttcggggccgaagaccgcgacgcccgcgcccgtgccaagacg
atcaatttcgccatactctacggcatttcgcgctggggtctggccaagcggctcgaggtt
gatccggatgaagcccaagcgatgatcgatacctatttcgagcgttttcccggcatcaac
cagtatatctcgaagacgctgcaatcggtccgcgagaccggctataccgagacattattt
ggccgaaagacatggttcgagcggatcaaatcccccaatcaggccgaacgtcagggcagc
gagcgggccgcgatcaacgcgccgatccagggcaccagcgccgacattatcaagcgcgcg
atggcgcggatgctgcctgccctggccgaggccggactggataaggtccggatgctgatg
caggtccacgatgaactggtcttcgaattgcccgagggtgatgtcgaagccgccagcacg
gtgatccgcacggtcatgtccggcgcggcggaaccggcggtaaaactatcggtgccgctg
gatgtggatatcgggactggcaagagctgggacgaggcgcactag
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