Sphingorhabdus sp. YGSMI21: CHN51_04915
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Entry
CHN51_04915 CDS
T05308
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy02020
Two-component system
sphy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CHN51_04915 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CHN51_04915 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphy03021
]
CHN51_04915 (rpoN)
Transcription machinery [BR:
sphy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CHN51_04915 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_IclR
Arg_repressor
Big_3_2
Motif
Other DBs
NCBI-ProteinID:
ATW02947
LinkDB
All DBs
Position
complement(1017296..1018804)
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AA seq
502 aa
AA seq
DB search
MALAPRLDLRQSQSLVMTPQLQQAIKLLTLSNLELETFISDEIEKNPLLDTGEISTESGE
SGDGPEPPAEPGAQGSDEILSAGPSEAEAALDMEGHTDSFTNNSLSDSDGALDGQLGLNG
ASSGSAPGGEAPDFENMLVAETNLTDYLMEQAGAVLSGIDLFVAQHIIDQIDECGYLQAE
LLELAQRLNVGLVDVERILGVVQTLDPVGVGARDLAECLALQARDADRYDPAMARLIDNL
DLLAKGALPQLKRICGVDDEDLMDMISELRNYDPKPGCKIGGGAVESVVPDVFVAERTNR
WIIEVNSATLPKVLVNRSYYSELKDGAQDKQSKEWLNECLADANWLVKALDQRQRTIVKV
ATEIVKQQEEFFRKGVAHLRPLTLKNIAEQIEMHESTVSRVTSNKYLSCSRGTFELKYFF
TSGIQSSTGGEAASAEAVKSHIKSLIDNEDPKKILSDDKLVALLKERGFDIARRTVAKYR
EALGLGSSVQRRRQKALEGKAA
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggcactcgcgcctcgcctcgatttgcgacaaagccagtcgctggtgatgacgccacaa
ctgcagcaggcgatcaagctgctgaccttgtccaatctcgaactggaaaccttcatttcc
gacgagatcgagaagaacccgcttctggataccggcgaaatatcgaccgagagcggcgag
tctggcgatggtccggagccgcccgccgaaccgggcgcgcagggcagcgacgaaatattg
tctgccggaccttcggaagccgaagcggctctggatatggaagggcatacggacagtttt
accaataacagcctgtcggacagcgatggcgcgctcgacggacagctcggattgaacggt
gccagttccggttcggcacccgggggcgaagcgcccgatttcgagaatatgctggtggcc
gagacaaatctcaccgactatctgatggaacaggccggcgcagtgctttccggaatcgat
ctttttgtcgcgcagcatatcatcgaccagatcgacgaatgcggctatttgcaggcagag
ttgctggagctggcgcagcgcctgaatgtcggtcttgtcgacgtcgagcgcattttgggt
gtcgtccagacactggacccggtcggtgtcggcgccagagatctggcagaatgtctggca
ttgcaggccagggatgcggaccgttatgatcccgccatggcgcggctgatcgataatctc
gatctgctggccaagggcgcgctgccgcagctcaagcgcatatgcggtgtcgatgacgaa
gacctgatggatatgatcagcgaattgcgcaattacgatccgaagcccggctgcaagatc
ggcggcggggcggtcgagtccgtggtgccggacgtgtttgtcgcggaacggaccaaccgc
tggatcatcgaagtgaacagcgccaccctgcccaaagtgctggtgaaccgcagctattat
tccgaactgaaggacggcgcgcaggacaagcagtcgaaggaatggctgaacgaatgcctc
gccgacgccaactggctggtcaaggcgctcgatcagcggcagcggacgatcgtcaaggtc
gcgaccgagatcgtcaagcagcaggaagagtttttccgtaagggtgtagcgcatctccgg
ccgttgacgcttaagaatatcgccgagcagatcgagatgcatgagtcgaccgtcagccgg
gtgacatccaacaaatatctctcctgctcgcgcgggacgttcgagctcaaatatttcttc
accagcggaatccagtcctcgaccggtggcgaagcggcgtcggcggaagcggtaaaaagt
catatcaaatccctgatcgataacgaggatcccaagaagatcctgtccgacgacaagctg
gtcgccctgctcaaggagcgggggttcgacattgcccggcgcaccgtggccaaatatcgc
gaagcgctgggtctgggcagctcggtccagcggcgccggcagaaggcgctcgaaggcaag
gccgcctag
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