Sphingorhabdus sp. YGSMI21: CHN51_10350
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Entry
CHN51_10350 CDS
T05308
Name
(GenBank) hypothetical protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphy03032
]
CHN51_10350
03400 DNA repair and recombination proteins [BR:
sphy03400
]
CHN51_10350
Enzymes [BR:
sphy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CHN51_10350
DNA replication proteins [BR:
sphy03032
]
Prokaryotic type
DNA Topoisomerases
CHN51_10350
DNA repair and recombination proteins [BR:
sphy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CHN51_10350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Top1B_N_bact
Topoisom_I
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
ATW05493
UniProt:
A0A2D3RID5
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All DBs
Position
2128066..2129073
Genome browser
AA seq
335 aa
AA seq
DB search
MIHDSSLGIPSLVYSSDEEPGISRVRRGRGFQYLLPDKSHLKCRVELARIRKLGIPPAYS
DVWICPKANGHIQATGFDAAARKQYRYHDDWRLYRDRQKFDQLAEFATRLPRIRRKVNAL
LRPDGAADVQSKEVAIAALVRLIDRTAIRVGGSSRMSKGATTLDIGNIRYDEDRLRLRYR
AKGGKKVSCSLRDTRLQRILEQIDDLPGKRLFQYVGSDGAVHPLDSGDVNDWLKEASGMD
SLSAKMFRTWHGSVAALDAIASLENPTNKQACEAAAATLRNTPAICRKSYVHPAVFDLVE
MDAEERAALIEGLGADIAGLRVGENRFVGLIGGGR
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgatccacgattcctctctcggcatccccagcctggtctacagcagcgacgaggagccg
ggcatatcgcgggtgcggcgggggcgggggtttcaatatctattgcccgacaagagccat
ctgaaatgccgggtggaactggcgcggatcaggaagctgggcattccgccggcctatagc
gacgtgtggatctgccccaaggccaatggccatattcaggcgaccggtttcgatgccgcg
gcgcgcaagcaatatcgctatcatgacgactggcggctctatcgcgaccggcagaaattc
gaccagctggcggaatttgccacgcggttgccgcggatccggcgcaaggtgaacgctttg
ctgcggcccgacggcgcggccgatgtgcaaagcaaggaggtggcgattgccgcgctggtg
cggctgatcgaccggaccgccatccgggttggcggcagctcgcggatgagcaagggggcg
actacgctggatatcggtaatatccgctatgacgaggacaggctgcgcctgcgctatcgc
gccaagggcgggaagaaggtgagttgcagtctgcgcgacacgcggctgcagaggatattg
gagcagattgacgatctgcccggcaagcgcctgttccaatatgtcggcagcgacggcgcg
gtccatccgctcgacagcggcgacgtcaacgactggctgaaagaggcgtcgggcatggac
agcctgagcgccaaaatgttccgcacctggcacggcagcgtcgccgcgctggacgcgatt
gcttcccttgagaacccgacgaacaaacaggcctgcgaagccgccgctgcgaccctgcgc
aacacgccggcgatttgccgaaagagctatgtccatccggcggtgttcgatctggtcgag
atggacgcggaggaacgggcggcgctgatcgaggggcttggcgcggatatcgcgggcctg
cgggtgggcgagaaccgctttgtcgggttgattggcggagggcgttga
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