Sphingorhabdus sp. YGSMI21: CHN51_11220
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Entry
CHN51_11220 CDS
T05308
Name
(GenBank) hypothetical protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CHN51_11220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphy03400
]
CHN51_11220
Enzymes [BR:
sphy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
CHN51_11220
DNA repair and recombination proteins [BR:
sphy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CHN51_11220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
ATW04033
UniProt:
A0A2D3REA5
LinkDB
All DBs
Position
2294524..2295999
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AA seq
491 aa
AA seq
DB search
MVADFRGGNALAKSTYRISLLSEVDLEGWRDHARRLLQGGVAPDQVTWTVEGRGNSGELD
LSPPAAFPEQSSDQIARPVRISKTLLSLINSALLHSNEDRFDLAYRLLYRAQSVPALHRN
PADADVLKLNRYAKAIRRDIHKMHAFVRFRKIGASEGREQFVAWFEPDHHITEAVAPFFR
NRFTGMDWLIVTPGASIAWDGQKLSVGPGGCKEDVPQEDVVEAEWRTYYANIFNPARVKI
NAMKSEMPMKYWKNLPEAELIPSLLEQAGTRVEAMVAGAPDDRLFDSRTDEPAADRPTSL
DQLYALLEQQPDAPRDKFSDRLIHGIGPDHADIMIIGEQPGDQEDREGKPFVGPAGQLLD
RALEQAHIDRQQTFLTNAVKRFKFTPRGKRRIHETPNVGEINYYRWWVEQEIRLVNPKLV
VALGATAARSLTGKAVTISRHRGEILPGPDGRSILITVHPSYLLRIPDEQGRQVEYAKFV
RDLQLADNFVH
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggttgcagattttagaggcggcaatgctctcgccaaaagcacttaccggatatcactc
ttgagcgaagtcgatctcgagggttggcgcgaccatgcgcggcggcttttgcaagggggt
gtcgcgccggatcaggtgacctggacagtcgaggggcgcggcaatagcggcgaactggat
ctgtcgccaccagccgcttttccggagcaaagcagcgaccagatcgcgcgccctgtccgg
atatcgaagacgctgctgtcgctgatcaacagcgcgctgctgcacagcaatgaagatcgg
ttcgatctcgcttaccgtctcctctatcgcgcgcaatcggtgcccgctctgcaccgcaat
cccgccgatgccgatgtgctgaagctgaaccgctacgccaaggcgatccgccgcgatatc
cacaagatgcacgcctttgtccgcttccgcaaaatcggcgcgtcagaaggccgcgagcaa
tttgtcgcctggttcgaaccggaccatcatatcaccgaagcggtggccccgtttttccgt
aaccgcttcaccggcatggactggctgatcgtcaccccgggcgcgagcattgcatgggat
ggccagaagctctcggtcggccccggcggctgcaaggaggacgtgccgcaggaggatgtg
gtcgaggccgaatggcggacctattacgccaatatcttcaacccggcccgggtcaagatc
aacgcgatgaagtccgaaatgccgatgaaatactggaaaaatttgcccgaggcggagctg
attccttcgctgctggaacaagccgggacccgggtcgaggcgatggtggcgggcgcgccc
gatgacaggctatttgactcgaggacggatgaaccggccgcagatcggccaacctcgctg
gatcagctctacgcgctgttggaacagcaacccgacgcgcccagagacaaattttccgac
cgattgatccacggtatcggtccggaccatgccgatatcatgatcatcggcgagcagccc
ggcgatcaggaggaccgggagggcaagccgtttgtcggaccggcaggccaattgctcgac
cgcgcgctggagcaggcccatatcgaccggcagcagacatttctcaccaacgccgtgaaa
cgcttcaaatttaccccgcgcggcaagcggcgcattcacgaaacccccaatgtcggcgag
atcaactattatcgctggtgggtcgaacaggagataaggctggtcaatccgaagctggtg
gtggcgctcggcgcaaccgctgcccgcagcctgaccggcaaggcggtcacaatctcgcgc
caccgcggcgaaatattgcccgggccggatggccggtcgatcctgatcacggtccacccg
tcctatctgctgcgcattcccgacgagcaggggcggcaggtcgaatatgcgaaattcgtt
cgtgatctgcagctggcggacaattttgtccactga
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