Sphingorhabdus sp. YGSMI21: CHN51_11440
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Entry
CHN51_11440 CDS
T05308
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHN51_11440 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphy03019
]
CHN51_11440 (recQ)
03400 DNA repair and recombination proteins [BR:
sphy03400
]
CHN51_11440 (recQ)
Enzymes [BR:
sphy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHN51_11440 (recQ)
Messenger RNA biogenesis [BR:
sphy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHN51_11440 (recQ)
DNA repair and recombination proteins [BR:
sphy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CHN51_11440 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATW04073
UniProt:
A0A2D3REE3
LinkDB
All DBs
Position
complement(2344563..2346341)
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AA seq
592 aa
AA seq
DB search
MTEALLPLLKSTFGYSSFRGMQEPVMDRVMAKRNTLAVMPTGSGKSLCYQLPAIANKGTT
IVISPLIALMHDQLRSAEAVGIRAATLTSADDNRAETIARLRAGELDLLYAAPERASQPH
FRELLEQTDVSLFAIDEAHCVSEWGHDFRPDYRLLRPLLDHFGSVPRLALTATADAHTRD
DILVQLGIEQDGLILAGFDRPNIRYSMSPRSGLARQVGDLVDRIPGPGIIYAQTRAATEK
MASQIAATGRSARAYHAGLPPEVRQQNQHNFVASEDMVMVATIAFGMGIDKPDVRFVAHA
GLPKSIEAYYQETGRAGRDGDPAEAHMFWGAEDFARARQRLGEIDETRLESERTRLAALG
GLVETPGCRRAVLLRHFGENPPERCGNCDNCLNAPKTRNVTELARKFLSAVYRTGQSFGV
THLEAVLTGRQDEKILSRGHDQLSVFDIVGEEEAALIKPVSRSLLLRDALRNTEHGGLMF
GPEARKILKGEQEVAIVEPPKRASRKRRGGTASPNPFGDPLFEALRAKRMELAKELGVPP
YVIFHDSVLRDMTGLKPGSLSALGELPGIGAAKLEKHGEAFLAVIREMTEAA
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaagcgctccttcccctgctcaaatcgacattcggctacagcagctttcgcggc
atgcaggaaccagtgatggaccgggtgatggcgaagcgaaacacgcttgccgtgatgccg
accgggtcgggcaagtctctctgctaccagcttcccgccattgccaacaagggcaccacc
attgtgatctccccgctgatcgcgctgatgcacgaccagttgcgcagcgccgaggcggtc
gggataagggcggccaccctcacctccgccgatgacaatcgcgcggagacgattgcccgg
ctaagggcgggcgagctggacctgctctacgccgcgccggaacgtgcttcccagccccat
ttccgggaattgctggagcagaccgatgtttcgctcttcgccatcgacgaagcgcattgc
gtgtccgaatggggtcatgatttccgccccgactatcgcctgctgcgcccgctgctcgac
catttcgggtcagtgccaaggctggcgctgaccgctaccgccgatgcgcatacccgcgac
gatatattggtgcagctggggatcgagcaggacgggctgatcctcgctggtttcgaccgg
cccaatatccgctacagcatgagtccgcgcagcggccttgcacggcaggtcggcgatctg
gtcgaccgcatcccgggaccgggcataatctatgcgcagacccgcgccgcgaccgagaaa
atggccagccagattgctgctaccggacgcagcgcgcgcgcctatcacgctggcctgcca
ccggaagtgcgccagcagaaccagcataatttcgttgcttcggaagatatggtgatggtc
gccacgatcgcctttggcatgggcatcgacaagccggatgtccgctttgttgcccatgcc
gggctgcccaaatcgattgaggcttattatcaggaaaccggccgcgccggccgcgacggc
gacccggccgaagcgcatatgttctggggtgcggaagatttcgccagagcgcggcagcgg
cttggcgagatcgacgagacccgactggagagcgagcggaccaggctggcggcgctcggc
ggtctggtcgaaaccccggggtgccgccgcgcggtgttgctccgccattttggcgaaaat
cctcccgagcgatgcggcaattgcgacaattgcctgaacgctccgaagacccgcaatgtc
accgaactggcacgcaaattcttgtccgccgtttaccgcaccggccagagtttcggggtc
acccatctcgaagccgttctcaccggcaggcaggatgaaaaaatcctctcgcgcggccac
gaccagctgtcggttttcgatattgtcggagaggaggaagctgcactgatcaagccggtg
tcccgctcgctgctactccgcgatgctttgcgcaacaccgaacatggcggcctgatgttc
ggccccgaggcgcgcaagatactcaagggtgaacaggaagtcgccatcgtcgaaccgccc
aagcgtgcctcacgcaaacggcgcgggggcacggcctcgccaaacccctttggcgatccc
ctgttcgaagcactgcgggcaaagcgcatggaactggccaaggaactcggcgtcccgcct
tatgtcatcttccatgacagcgtgctgcgtgatatgaccggcctgaaaccgggcagcctg
tcggcgctcggcgagctgccgggcatcggcgcagccaaactggagaaacatggtgaagcc
tttctggccgtgatccgtgaaatgaccgaagcggcatga
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