Sphingorhabdus sp. YGSMI21: CHN51_12250
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Entry
CHN51_12250 CDS
T05308
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CHN51_12250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphy03400
]
CHN51_12250
Enzymes [BR:
sphy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHN51_12250
DNA repair and recombination proteins [BR:
sphy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CHN51_12250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
PriA_C
PriA_3primeBD
ResIII
Helicase_C
Zn_ribbon_PriA
Zn_ribbon_6
PIF1
AAA_22
zf_Rg
AAA_30
MerR
AAA_16
MerR_1
AAA_19
DZR
Motif
Other DBs
NCBI-ProteinID:
ATW05540
LinkDB
All DBs
Position
complement(2533669..2535834)
Genome browser
AA seq
721 aa
AA seq
DB search
MNRVRVLLLNAALGPLDYRVPDGMRVEPGSIVMAPLGPRKLPGVVWEADSFPVEEIDPKK
LRPLLEVRDVPPLPAPLRRLIEWTAAYYFASPASVLRMVLSSGAAFADNRPISEYRLNGN
VPDRITPQRQQALEKLEGVQGTISELANKAGVSIAVIRGLEKLGVFDREEVSPFATSAKP
LPDFDTVDLSEDQKDVSNILIEAVRASQFKPFLLDGVTGSGKTEVYFEAVAEALRQDRQV
LVLLPEIALTEPFLNRFEARFGAEPLAWHSGMKQSERKRNWRALAEGNAKVIVGARSALF
LPYANLGLIIVDEAHETSFKQEDGVRYHARDVAVMRGLYEQIPVILASATPAIETRHQVE
QGNYELLDLPARFGGATMPDIEALDLTQDVPPRGNWLAPTLVHALEENLERGEQSLLFLN
RRGFAPLTLCRTCGHRIACPNCTAWMVEHRLTRRLACHHCGHVMPIPEKCPECGDEDSLV
ACGPGVERICDEVKMLFPQARTAIVTSDTIWSPQKAADFVQQMEAGAIDIVVGTQLVTKG
YHFPNLTLVGVVDADIGLEGGDLRAAERSFQQIAQVAGRAGRAEKPGRVYVQTRMPNAPV
IQALIENDREGFYAAEIESRRQALAPPFARWAAIIVSSEDNKEAMETARLIGQTAPKLDG
FSVFGPAPAPLAMLRGRHRHRLLVHALRSVDLQNIMREWLEQLEWPRAVRVGVDVDPYSF
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgcgttcgtgtactcctgcttaatgccgccctcggtccgctcgattatcgtgtg
cccgacggcatgcgggtagagccgggttcgatcgtgatggcgccgctgggtccgcgcaaa
ctgcccggcgtggtatgggaagcggacagctttccggtcgaggaaatcgatccgaaaaaa
ttgcgcccgctgctcgaggtccgcgatgtaccgccgctgcccgcgccgctgcggcggctg
atcgaatggaccgccgcttattatttcgcctcgccggcatcggtgctgcgcatggtcctg
tcgagcggcgctgcctttgccgacaatcgcccgatcagcgaatatcgcctgaacggcaat
gtgcccgaccggatcaccccgcaacggcagcaggcgctggaaaaacttgaaggcgttcag
ggtacgatcagcgaactggccaacaaggccggcgtatcgatcgcggtgatccgagggctg
gaaaagctgggcgtgttcgatcgggaggaagtctctcccttcgccaccagcgccaagcct
ttgcccgatttcgacacggtggatctcagcgaggaccaaaaggacgtcagcaacatattg
atcgaggctgtgcgcgcctcacagttcaaaccctttctgctcgacggtgtgaccggttcg
ggcaagaccgaagtctatttcgaggcggtcgccgaagccttgcggcaggaccggcaagtg
ctggtgctgctgcccgaaatcgcgctgaccgagccgtttctcaaccgtttcgaagcgcgt
ttcggggccgagccgctggcctggcacagcggcatgaaacagtcggaacgcaagcggaac
tggcgggccttggccgaaggcaatgccaaggtcatcgtcggcgcgcgctccgccctgttc
ctgccttatgccaatctcggcctgatcattgtcgacgaagcgcacgagaccagcttcaag
caggaagacggcgtccgctatcatgcgcgcgacgtcgcggtgatgcgcgggctttacgag
cagatcccggtgatattggcctcggccacgccggcgatcgagacccgccatcaggtcgaa
cagggcaattatgaactgctcgatctgccggcgcgttttggcggcgcgacgatgcccgac
atcgaggcgctggatctgacccaagacgtgccgccgcgcggcaactggctggccccgacg
ctggtccacgcgctggaggaaaatctcgagcgcggcgagcaatcgctgctgtttctcaat
cgtcgcggctttgcgccgctgaccctgtgccgcacctgtggccaccggatcgcctgcccc
aattgcaccgcctggatggtcgaacatcgcctgacccgccgcctcgcctgccaccattgc
ggccatgtcatgccgattccggaaaaatgtcccgaatgcggcgacgaagacagtctggtc
gcctgcggacccggcgtcgaacggatttgcgacgaggtcaaaatgctgttcccgcaggcg
cggactgcaattgtcacctcggacacgatctggtcgccacagaaagccgccgatttcgtc
cagcagatggaggcgggcgcaatcgatatcgtcgtcggcactcagctggtgaccaagggc
tatcattttcccaatctgactttggtcggtgtggtcgatgcggatatcgggctggaaggc
ggcgatctgcgcgccgccgagcgcagttttcagcagattgcccaggtcgcgggacgggcc
ggacgggcggaaaagccgggccgggtctatgtccagacccgcatgccgaatgcgcccgtg
atccaggcgctgatcgagaatgaccgggagggcttttatgctgccgagatcgaatcccgg
cgtcaggcgctggccccgccctttgcccgctgggccgcaatcatagtgtcgtccgaagat
aataaagaagcgatggagaccgcccgcctgattggccagaccgcgcccaagctggacgga
ttttctgtcttcggccctgcccccgctccgctggcgatgctgcgcggccggcaccggcac
aggttgctggttcatgcgctgcggtcggtcgacctgcagaatatcatgcgcgaatggctg
gaacagctggagtggccgcgcgcggtgcgggttggggtggatgttgatccctatagcttt
gtttga
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