Sphingorhabdus sp. YGSMI21: CHN51_12890
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Entry
CHN51_12890 CDS
T05308
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHN51_12890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphy03019
]
CHN51_12890
Enzymes [BR:
sphy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHN51_12890
Messenger RNA biogenesis [BR:
sphy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHN51_12890
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ATW04333
UniProt:
A0A2D3RF50
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All DBs
Position
2664796..2666169
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AA seq
457 aa
AA seq
DB search
MTKFSDFALAEPIQKRVAEGGYTTPSPIQQQAIPPALEGKDILGIAQTGTGKTAAFSLPS
IHHLLNDKRRAGRFECRMLVLAPTRELARQIADSMTGYSKGLGLYVTSAFGGVPINRQKR
ILERGVDVLVATPGRLLDLIDQRYLTLSKVEILVLDEADQMLDLGFIVPLKKIVPMLPKQ
RQSLFFSATMPKTISQLADQFLTNPVQVSVAPQSTTAERVDQKVTYINQDDKQRLLKDFI
NKENPDHMLVFTQTKHGADKVVKNLMAVGIHSAAIHGNKSQPQRERALGDFKKGKINILV
ATDIAARGIDVDGITHVINFDMPNVSEQYVHRIGRTARAGASGISYSLVAPDERQFLRDV
VKLTGVKPEVIALPEGYDEPPREEVAPRIYGQKPKKYGAKPTRSGPPKAKHSSRKGRPGG
GGSGRGGPGSAAKSDGPKHWNNGAKSFKRRQARNADA
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
ttgactaaattttctgatttcgcactggcggaacctattcaaaaacgcgtggccgaaggc
ggctacaccactccatccccgatccagcagcaggcgatccccccagcgcttgaaggcaag
gacattctcggtatcgcgcaaaccggaaccggcaagaccgctgcgttctcgctgccgtct
atccatcaccttctgaacgacaaacggcgcgccggccgcttcgagtgccggatgctggta
ctggctccgacccgcgaactcgcgcgtcagattgccgacagcatgaccggttattccaaa
ggtctcggtctttatgtcacctccgcttttggcggcgtgccgatcaaccggcagaagcgc
atcctggaacgcggtgtcgacgtattggtcgcaacgcccggtcgtctgctcgatctgatc
gaccagcgctatctgacactctccaaggtcgaaattctggtgctcgacgaagccgaccag
atgctcgatctcggcttcattgttccgctgaagaaaatcgttccgatgctgccaaagcag
cgccagagcctgttcttctcggcaaccatgccgaagaccatctcgcagctggccgaccag
ttcctgaccaatccggtccaggtttcggttgcgccgcagtcgacgacggccgagcgggtc
gaccagaaggtcacctatatcaaccaggacgacaagcagcgtctgctgaaggatttcatc
aacaaggaaaatccggatcatatgctggtgttcacccagaccaaacatggcgccgacaag
gttgtgaaaaatctgatggccgtcggtatccactccgccgcgatccacggcaacaagagc
cagccgcagcgcgaacgtgctttgggtgacttcaaaaagggcaagatcaacattcttgtc
gccacggatatcgcggcgcgcggcatcgatgtcgacggcattacccatgtcatcaacttc
gacatgccgaacgtgtccgaacaatatgttcaccggatcggccggacagcgcgggcaggg
gcgagcggtatttcctactcgctggtcgctcccgacgagcgccagttcctgcgcgatgtg
gtcaagctgaccggcgtgaaaccggaagtgatcgctttgccggaaggttatgacgagccg
ccgcgcgaagaagtcgcaccgcgtatctatggccagaagcccaagaaatatggtgcgaag
ccgacgcgaagcggaccgccgaaagccaagcacagttcccgcaaaggccgtcccggcggc
ggtggttcgggtcgtggcggaccgggttcggccgccaagagcgacggaccgaagcactgg
aacaatggtgcgaagtcgttcaaacgccgtcaggcgcgcaacgcggacgcttag
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