Sphingorhabdus sp. YGSMI21: CHN51_13330
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Entry
CHN51_13330 CDS
T05308
Name
(GenBank) dicarboxylate--CoA ligase PimA
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy00061
Fatty acid biosynthesis
sphy00071
Fatty acid degradation
sphy01100
Metabolic pathways
sphy01212
Fatty acid metabolism
sphy02024
Quorum sensing
sphy04146
Peroxisome
Module
sphy_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
CHN51_13330
00071 Fatty acid degradation
CHN51_13330
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
CHN51_13330
09145 Cellular community - prokaryotes
02024 Quorum sensing
CHN51_13330
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sphy01004
]
CHN51_13330
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sphy04147
]
CHN51_13330
Enzymes [BR:
sphy01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
CHN51_13330
Lipid biosynthesis proteins [BR:
sphy01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
CHN51_13330
Exosome [BR:
sphy04147
]
Exosomal proteins
Exosomal proteins of breast milk
CHN51_13330
Exosomal proteins of breast cancer cells
CHN51_13330
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GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ATW04405
UniProt:
A0A2D3RFA4
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All DBs
Position
2773973..2775652
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AA seq
559 aa
AA seq
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MTETHSDQTPIWKSHYNHPTPWDQFYPPLTMPGMFFRSAGRRGDANLLDFMGRKYSYGEV
AAGVVRVAKGLQEMGVGKGDRIGLFLPNVPHYVSAYYGAMAIGATVVNFSPLYTVEELNH
QVEDSGTKILFTLSATALFPTAYQVLEQSSLERLVVGSIAGALPAGKALFYSLFRRKESS
PQPDDDRITTFSDLIDNDGVYKAPNIRPDKDIALLQYTGGTTGTPKGAMCSHQNLTANAR
QINNIDPFIDETDRLMGVLPFFHVFANSAVLNRTVARGGEIVMLPRFDAKQTLKAITRTK
ITAMPGVPTMYQALLDHPDIDKTDFSSLKVCVSGGAPLPMELKTKFEAKTGAKLVEGYGL
TESCGVVSANPYEGLNKPGTIGQPVPGTLVKLVDKADPTKPAPDGEPGELIFSGPQVMQG
YWNLPEEDENVFVDGFLRTGDVATIDEDGYIKIVDRLKDMIAVGGFKVFPSQVEEVLYKH
QAVKEALVIGVPDAYRGESPKAYVALEPDSTVSGEELKDWLNPQLGKHERVVGVVIRDSL
PKTMIGKLDRKALRTEELD
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaacccactctgaccagacaccgatctggaaatcgcactataatcatcccacg
ccctgggaccagttctatccgcccctgacgatgcccggaatgttcttccgctccgctggg
cggcgcggggacgcgaatctgctcgacttcatgggccgcaaatatagctatggcgaagtg
gccgccggcgtggtccgtgtcgccaaggggctgcaggaaatgggcgttggcaagggcgac
cggatcggcctgttcctgcccaatgtgccccattatgtcagtgcctattacggcgcgatg
gcaatcggcgcgacggtggtcaacttttcgccgctctatacggtcgaggagctcaaccac
caggtcgaagacagcggtaccaaaatcctgttcacgctctcggccactgcattattcccg
accgcctatcaggtgctcgagcaatcgagtctcgaacggctggtagtgggcagcattgcc
ggcgcgctgccggcgggcaaggcgcttttctattcgctgttccgtcgcaaggagagcagc
ccgcagcccgatgatgaccggatcaccaccttttccgacctgatcgacaatgacggcgtc
tacaaggcgcccaatatccgcccggacaaggatattgcgctgctgcaatatactggcggc
accaccggaacgcccaagggcgcgatgtgcagccaccagaatctgaccgccaacgcgcgg
cagatcaacaatatcgatcctttcatcgacgagaccgaccggctgatgggcgtgctgcct
ttcttccatgtcttcgccaatagcgcggtactcaaccgcacggtggcgcggggtggcgaa
atcgtcatgctgccgcgctttgacgcaaagcagacattgaaggcgatcacccggaccaag
atcaccgccatgccgggcgtgccgaccatgtaccaggcactgctggaccatcccgatatc
gacaaaaccgatttctcgtcgctcaaggtctgcgtctccggcggcgcgccactgccgatg
gagctgaaaacaaaattcgaggcgaaaaccggcgccaagctggtcgagggctatggcctg
accgaaagctgcggcgtggtcagcgccaatccctatgaaggactcaacaaacccggcacg
atcggccagccggttccgggaaccctcgtcaaactggtcgacaaggccgatccgaccaag
ccggctccggacggcgaaccgggggaattgatcttctccggtccgcaggtgatgcagggc
tactggaacctcccggaggaggacgagaatgtatttgtcgacggtttcctgaggaccggc
gatgtcgcgaccatcgacgaggacggctatataaagattgtcgatcgtctgaaggacatg
atcgccgtcggcgggttcaaggtttttccgagccaggtcgaggaagtgctctacaagcat
caagcggtcaaggaagcgctggtgatcggcgttcccgacgcctatcgcggggaaagtccc
aaggcctatgtcgcgctggaaccggacagcacagtcagcggagaagagctgaaagactgg
ctgaatccgcagcttggcaagcatgaacgggtggtcggtgtcgtgatccgtgacagtctg
cccaagaccatgatcggcaagctcgatcgcaaggcgctacggaccgaggaactggactag
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