Sphingorhabdus sp. YGSMI21: CHN51_15245
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Entry
CHN51_15245 CDS
T05308
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHN51_15245 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphy03019
]
CHN51_15245 (rnr)
03016 Transfer RNA biogenesis [BR:
sphy03016
]
CHN51_15245 (rnr)
Enzymes [BR:
sphy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CHN51_15245 (rnr)
Messenger RNA biogenesis [BR:
sphy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CHN51_15245 (rnr)
Transfer RNA biogenesis [BR:
sphy03016
]
Prokaryotic type
tRNA degradation factors
CHN51_15245 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
PF0610-like_N
Symplekin_C
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
ATW04741
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All DBs
Position
complement(3184426..3186723)
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AA seq
765 aa
AA seq
DB search
MAGPRKSQKSNQVPTRQQILDFIERSERPAGKREISRAFGLRGPDKIALKALLKDMAKDG
LLAGDPARALHKVGGVPKVTVLRIVEIDGNEAIGIPEKWEEGSGPAPKLRIKEKGRRAAL
AIGDRILARTEERGQGHIAFLMKKLAQSSEMLLGVVEKDERDRYWLKPVDRKIRRSTPII
DLGEAEPGKLVLAEPVKRGSEVKARVKEILGDPFAPKSFSLIAIHKFEIPLHFPDAVTEE
AEQATKLEISKEKREDLRHLPIVAIDPADARDHDDAIWAEPDDSPDNKGGFKALIAIADV
SYYVRSGSKLDREAYKRGNSVYFPDRVVPMLPEALSTDVCSLKQDVERAALVCHVTINAK
GQVTGSRFTRAIVKLAGNIAYEDAQAAMDGKLDHPLKSKALEPLWACWKLLAKARDEREP
LNLDLPEKRVVLDDQGKIVEIAIRERLDAHRLVEDYMIVANVAAARMLESKKSPVIYRVH
ETPSREKLIALKDYLKSFDMSFAMGQVIKPAVFNNLISQVDDELLLPLVMEQILRSQTQA
YYGHTNMGHFGLSLGSYAHFTSPIRRYADLIVHRALVSACKLEQPAPENSAIPEYSWLGK
EEAGRLELISEKISKLERRAMKAEWETVDRYISAHLADRVGEVVKCRITGVQNFGFFATV
EELGGDGLVPVRTLGAERFDYDESKQQLTGMDSGTTYNVGQKIELRLVEANAATGSLLFE
LAEGANHMGSRPAPHRAGKGKPHRKGKPGRPANIRGNKSKARRKK
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtccccgcaaatctcagaaaagcaatcaggttcccacgcgccagcaaatactg
gattttatcgagcggtcggaacggcctgcaggaaaacgcgagatttcacgagccttcgga
ttgcggggtccggacaagattgcgctcaaagcgctgctcaaggacatggcgaaggacggt
ctgctggcgggcgatccggccagggccttgcataaggtgggcggcgttccgaaggtgacc
gtgctcaggattgtcgagattgacggcaatgaggcgattggcattcctgagaaatgggaa
gagggaagcggccccgcgccaaagctcaggatcaaggaaaagggccggcgcgctgcgctg
gcaatcggcgaccgtattcttgcccggacggaagagcgcgggcagggccatattgccttt
cttatgaagaaactggcgcagagcagcgaaatgctgctgggcgtcgtcgaaaaggacgag
cgcgaccgctattggctgaaaccggtcgaccgcaagatccgccgcagcacgccgattatc
gatctgggcgaggccgaaccgggcaagctggtgctggccgaaccggtcaagcgcggctcc
gaagtaaaagcgcgggtgaaggaaatattgggcgatccgttcgctcccaaatcgttcagc
ctgatcgccatccataaattcgaaatcccgctgcactttcccgatgcggtgacggaggaa
gccgaacaggcgacaaaacttgaaatctcgaaagagaaacgcgaggatctgcgccatctg
ccgattgtcgcgatcgatccggccgatgcccgcgaccatgatgacgcgatatgggccgag
ccggatgatagtccggataacaagggcggcttcaaggcgctgatcgccatcgccgatgtc
tcttattatgtccgttcgggcagcaagctcgaccgggaagcctataagcgcggcaacagc
gtctatttccccgaccgggtggtaccgatgctgccggaagcgctgtcgaccgatgtctgt
tcgctgaaacaggatgtcgagcgcgcggctctggtctgtcacgttacgatcaatgcaaaa
ggacaggtgacaggttcccgcttcacccgcgcgatcgtcaagctggccggcaatatcgcc
tatgaagacgcgcaggcggcgatggacggaaagctggaccatcctctgaagagcaaggct
ctggaacctttatgggcatgctggaaactgctcgctaaggcgcgggacgaacgcgaacca
ctcaatctcgatctgcctgaaaagcgggttgtgctcgacgatcagggcaagattgtagaa
attgccattcgcgaacggctcgacgcccaccgtctggttgaagattatatgatcgtcgcc
aatgttgcggcggcgcggatgctggagtcgaaaaaatctccggtcatctaccgcgtccat
gaaacgccgtcccgcgagaagctgatcgcgctgaaggactatctcaagagcttcgatatg
agctttgccatggggcaggtgatcaagccggcggtcttcaacaatctcatctcgcaggtc
gatgacgaattattgctgcctctggtcatggaacagattttgcgcagccagacccaagct
tattatggccatacgaacatgggtcatttcggcctgtcgctgggcagctacgcgcatttc
accagcccgatccggcgctatgccgatctcatcgtgcatcgcgcgctggtcagcgcctgc
aagctggagcaaccagcaccggaaaacagcgccattccggaatattcctggctgggcaag
gaagaggccgggcgcctcgagctgatctcggaaaaaatctccaagctggaacgccgcgcg
atgaaggcggaatgggaaaccgttgaccgctatatctcggcccatctggccgaccgggtc
ggcgaagtcgtcaaatgccggatcaccggtgtccagaatttcggcttttttgccacggtc
gaggaactgggcggcgatgggctggttccggttcgcacgctgggtgccgaacggttcgat
tatgacgagtcgaaacagcagcttaccggcatggacagcggcaccacctataatgtcgga
cagaagatcgaactgcgactggtcgaagccaatgccgcgaccggcagcctgttgttcgaa
ctggccgagggtgccaaccatatgggatcccgtcccgctccgcatcgcgctggcaaggga
aagccgcaccgcaagggcaagccgggtcgtcccgccaatattcgcggaaacaagagtaag
gcgcgccgaaagaaatag
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