Sphingorhabdus sp. YGSMI21: CHN51_15345
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Entry
CHN51_15345 CDS
T05308
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphy03032
]
CHN51_15345 (topA)
03400 DNA repair and recombination proteins [BR:
sphy03400
]
CHN51_15345 (topA)
Enzymes [BR:
sphy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CHN51_15345 (topA)
DNA replication proteins [BR:
sphy03032
]
Prokaryotic type
DNA Topoisomerases
CHN51_15345 (topA)
DNA repair and recombination proteins [BR:
sphy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CHN51_15345 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Poly_export
DUF7343
MarR_2
Motif
Other DBs
NCBI-ProteinID:
ATW04759
UniProt:
A0A2D3RHL0
LinkDB
All DBs
Position
complement(3209083..3211677)
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AA seq
864 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGSDFKVLASYGHIRDLPPKDGSVDPDEGFAMTWQNYPDKAK
QLKEITAESKKATRLILATDPDREGEAISWHVQEVLRNKKALPEKVDRVTFNAITKAAVT
DAMAHPRSLDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVSLRLIVERE
REIEAFKPQEYWSVSAQMEQGGQAFEARLTIHDGKKLGKMDLATEEQAMLAKTAVENGLF
TVESIETKPLTRNPPPPFTTSTLQQEAARKLGYSASQTMRIAQQLYEDGAITYMRTDGVQ
MDGSAISAARKAITDRYDASYVPDSPRIYKSKAKNAQEAHEAIRPTSFSKRTVGSGDHAK
LYDLILKRAMASQMASARLERTTVEMLDGTGKTGLRANGQVVKFPGFLALYEEGRDDDKD
DDDGLLPAMSKGDSPAKKSVDASQHFTQPPPRYSEASLVKKMEELGIGRPSTYASIIKTL
KDRAYVRIEKNRFFAEESGRLLTGFLERFFDRYVAYDYTAGLEDELDEVSGGRAQWQAIL
EAFWHDFKPKTVEVMEKLPSEVTAELDTFLSDYLFPEKEDGTDPRLCPRCNEGKLALRGG
RFGAFVACSNYPECKFTRRFAQGGGANADADEGPQELGVDPDSDEKITKKVGRFGPYVEK
GEGKEAKRSSIPKDIPADEFGLEWAVKLLSLPREVGKHPETSEPVMAQIGRYGPYLSHDG
KSARLESTMEVFEIGMNAAVAKLADAAKNGGGRGRGKMEPLKIMGKHPRTESEIKLMDGR
YGPYVTDGTTNASLPKTVDKDQLTLEEAAQLIDDRAAKGPAKKRAKKAAPKKKAAAKKKP
AAKKKPAAKKKPAAKKAPAKAKSE
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgcagctagttatcgtcgagtcacccgccaaagccaaaaccatcgaaaaatatctggga
tcggatttcaaggtgttggcgtcctacggccatattcgcgaccttccacccaaggatggt
tcggtcgatccggacgagggatttgccatgacctggcagaactatcccgacaaggcgaag
cagctgaaagagatcaccgccgagtcgaagaaagcgacgcgattgatcctcgcgaccgac
cctgaccgcgaaggtgaggcgatcagctggcacgtgcaggaagtgctgcggaacaagaaa
gcgcttcccgaaaaagtcgaccgtgtcacgttcaatgcaattaccaaagctgcggtgaca
gatgcgatggcgcatccccgctcgctggatgaagatctgatcgacgcctatcgcgctcgc
cgggctctggactatctcgtgggctttaccttgtcgccggtattgtggcgcaagttgcct
ggcgcgaaatctgcgggccgcgtgcaatcggtctcgcttcgactaatcgttgaacgggaa
cgggagatagaggccttcaaaccgcaggaatactggtctgtcagcgcacagatggagcag
ggcggtcaggcgtttgaagcccggctgacgatccacgacggcaagaaactcggcaaaatg
gatctcgcgacggaagagcaagcgatgcttgcgaagaccgccgttgaaaatggcttgttc
acggtcgaatcgatcgaaaccaagccgcttacccgcaatccgccgccgccgttcaccact
tcgaccctgcaacaggaagcagcgcgcaagctcggctattctgccagtcaaaccatgcgg
attgcccagcaactttatgaagacggcgcgattacctatatgcgaaccgacggcgtccag
atggacggtagcgccatttctgccgcgcgcaaggcgatcaccgatcgctatgacgccagc
tatgttccggacagtccgcggatttacaaatccaaggcaaaaaatgcgcaggaagcgcat
gaagcgatccgtccgaccagcttttccaagcggaccgtcggaagcggcgatcatgcgaag
ctttacgatttgattctcaagcgtgcgatggccagccagatggcatcggcccggctcgaa
cgcaccaccgttgaaatgctcgatggcaccggtaaaaccggcctcagggcaaacggacag
gtcgtaaaattccccggtttcctggcgctttacgaagaaggtcgcgatgacgacaaggat
gatgatgacggcttgctgccagccatgtccaaaggcgacagcccagcgaagaaatccgtc
gatgcttcccagcatttcacccagccaccgccgcgctacagcgaagccagcctggtcaag
aagatggaagaactgggtattggacggccatcgacctatgcatcgatcatcaagacgcta
aaggaccgagcctatgtccggatcgagaaaaaccgcttttttgctgaggaaagcgggcgg
ctgctgactggctttctcgaacgtttcttcgatcgctatgtagcctatgactataccgcg
ggtctcgaggatgaactcgacgaagtcagcggagggcgcgcgcaatggcaggccattctg
gaagctttctggcacgatttcaaaccaaagacggttgaagttatggagaaacttccttcg
gaagttaccgcggaactggacacgttcctcagcgattatctgtttcccgaaaaggaagac
ggcaccgacccgcgactttgcccgcgttgcaacgaaggcaagttggcgctgcgtggtggt
cgtttcggtgcatttgtcgcctgttccaactatccggaatgcaagttcacccggcgtttc
gcgcagggcggtggcgccaatgcggatgcggatgagggcccgcaggaactgggtgtcgat
cccgacagtgacgagaaaatcaccaagaaggtcgggcgcttcggaccctatgtcgaaaaa
ggggagggaaaggaagccaagcgttcttccatacccaaggatatcccggccgacgaattt
ggcctcgaatgggctgtgaagctgctttcgttgcctcgcgaagttggcaagcacccggaa
accagcgaacccgtgatggcgcaaatcggtcgctatggtccttatctgagccatgatggc
aaatcagcgcgtctcgaaagcaccatggaagtgttcgaaatcggcatgaacgctgccgtc
gccaaattggcggatgctgccaaaaatggcggtggtcgtggccggggcaagatggaaccg
ctcaagatcatgggcaagcatccgcgcaccgagtccgagatcaagctgatggatggccgc
tatggtccttatgtcactgatggcacaaccaatgcgtccctgccgaagacggtcgacaaa
gatcagctgacactggaagaagcggcacagctgatcgatgatcgcgcagcaaagggaccg
gcgaaaaagcgggccaagaaagctgctccgaagaaaaaggcggcggcgaagaagaagcct
gctgccaagaaaaaaccagcagcgaagaagaaacccgccgccaagaaagcgccggcaaag
gcaaagtccgaataa
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