Sphingorhabdus sp. YGSMI21: CHN51_15960
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Entry
CHN51_15960 CDS
T05308
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy00550
Peptidoglycan biosynthesis
sphy01100
Metabolic pathways
sphy01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
CHN51_15960 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
CHN51_15960 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sphy01011
]
CHN51_15960 (mrdA)
Enzymes [BR:
sphy01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
CHN51_15960 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
sphy01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
CHN51_15960 (mrdA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
ATW04861
UniProt:
A0A2D3RGP1
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All DBs
Position
3333176..3335149
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AA seq
657 aa
AA seq
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MKPAKTISSAMQELTFTRRATVIGGLQIGVGVLLAARMAYISVAENERYKLLSESNRVNL
TLVPPRRGWLIDRNGKPIANNKTDFRIDIIPDRLRDKDKTVATLANLLSLDPEELERINR
ELEQAGSFQPVQVATGLDSEQYAAVSVRLPDLPGVSPRQGFSRNYPSGPAIGHLVGYVGI
ASAEDYKENPDPILITPGYKIGKDGLEKMFEDHLQGKPGAKRVEVTARGKIVRELNTRPD
VPGKPLQLTLDIDLQEYAARRLGPESGSVVVIDCLTGDILTMTSMPSFDPNSFSDGIGVT
EYGMLREDDHVPLLDKSLKSLFPPGSTVKPMVALSFLEAGLDPDETVNCNGGLQVGNRRF
RCWKRGGHGRVDMAKGIYQSCDVYFYYFAQKIGINPIALMANRLGLGQKYPLPVASQFYG
TVPDPAWLRKKHKREWQAYDTVNTTIGQGYMLVNPTQLAVMASRLATGKNIVPRLIMEEK
KSPIQTLNLDPEHLLYVQQAMSDVVNGPGTAGRARLPIENVKMAGKTGTAQVVNLDFGRG
GQDVAWKYRDHGLFVCFAPYDNPRYAAAVVIEHGGGSGAAYPVARDVLTFLYDRQKAMDV
LTGMEKSWGGTIQERMDRKMAAYRARKNLEKAMAENPAAASPETPESGTGAGAGDQD
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccggccaagaccatcagcagcgccatgcaggagctcaccttcacccgccgggcg
acggtgatcggcgggctgcagatcggcgtcggtgtgctgctggcggcgcgcatggcctat
atttcggtggccgagaacgaacgctacaagctgctctcggaaagcaaccgggtcaatctc
acgctcgtcccgccgcgccggggctggctgatcgaccgtaacggcaagccgatcgccaac
aacaagaccgacttccgtatcgacatcatcccggaccggctgcgcgacaaggacaagacc
gtggccacgctggccaatctgctgtcgctcgatccggaagagctggagcggatcaacagg
gagctggaacaggccggcagcttccagcccgttcaggtcgcgaccgggctcgattcggaa
caatatgccgctgtcagcgtccgccttcccgacctgcccggtgtttcgccacgacagggc
ttctcgcgcaactatcccagcgggccggcgatcgggcatctggtcggctatgtcggcata
gcctcggcggaagattacaaggaaaatccggacccgatattgatcacgccaggctacaag
atcggcaaggacggtctggagaagatgttcgaggaccatctgcagggcaagcccggcgca
aaaagggtcgaggtgacggcgcgcggcaagatcgtccgcgagcttaacacccggcccgac
gtgcccggcaagccgctgcaactgacgctcgacatcgacctgcaggaatatgcggcccgc
cgcctgggccccgaatccggctctgtggtcgtcatcgattgcctgaccggcgacatattg
acgatgacctcgatgccgtcttttgacccgaacagcttctccgacggcatcggggttacc
gaatatggcatgctgcgcgaggacgatcatgtgccgctgctcgacaagtcgctgaaaagc
ctgtttccgccaggttcgacggtcaagccaatggttgccctttccttcctggaggcaggc
ctggatccggacgagaccgtcaattgcaatggcgggctgcaggtcggcaaccggcgcttc
cgctgctggaaacggggtggtcacggacgggtcgacatggccaagggcatctaccagagc
tgcgacgtctatttctattatttcgcccagaagatcggcatcaatccgatcgcgctgatg
gccaaccgtctgggactggggcagaaatacccgctgccggtggcgagccagttttacggc
acggtccccgatcccgcatggctgcgcaagaagcacaagcgcgagtggcaggcctatgat
acggtcaacaccaccatcggccagggctatatgctggtcaatccgacccagctggcggtc
atggcgtcacggctggcgacgggcaagaatatcgttccgcgcctgatcatggaggagaag
aagtcgccgatccagacgctgaacctcgatcccgagcatctgctctatgtgcaacaggcg
atgagcgacgtggtcaacggccccggcacagccggtcgggctcggctgccgatcgagaat
gtgaaaatggccggcaagaccggcaccgcccaggtggtcaatctcgatttcggccgcggc
ggccaggatgtggcctggaaatatcgcgatcacggcctgttcgtctgcttcgccccctat
gacaatccgcgctatgctgccgccgtggtcatcgaacatggcggcgggtccggagcggcc
tatcccgtcgcgagggacgtcctgaccttcctctatgaccgccagaaggcgatggacgtg
ctgaccggcatggaaaaatcctggggcggcacgatccaggagcggatggaccggaaaatg
gcagcctatcgcgcgcggaaaaatctcgagaaggcaatggccgaaaatccggccgccgcc
agccctgaaacgcccgaatccggcaccggagccggcgcgggagatcaggattga
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