Sphingorhabdus sp. YGSMI21: CHN51_16545
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Entry
CHN51_16545 CDS
T05308
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHN51_16545 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphy03400
]
CHN51_16545 (mfd)
Enzymes [BR:
sphy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHN51_16545 (mfd)
DNA repair and recombination proteins [BR:
sphy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CHN51_16545 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ATW04958
UniProt:
A0A2D3RGV4
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All DBs
Position
3450870..3454340
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AA seq
1156 aa
AA seq
DB search
MSYPDRLLSAEQGMTIAGVPAGYRPLFLSEVATQSGRRTIFIATDDAAMSAVVEAARFFA
PDLDIIEFPAWDCLPYDRASPALHTTSDRLAALAKLAQPFSGAQLLVTTVNAVTQRVLAP
SRIKEFVTRLAPGTIVEQEKLISFLYANGFVRVDTVADSGEFAARGGLIDLFPPGAELPI
RIDLFGDEIETLRQFDPADQRTVGNIDSLELLPVSEFLLDPESITRFRTRYRDLFGAVAT
SDALYQSISEGRRLAGMEHWLPLLEDQLATIFDYVGDDSLILRDTAGTAAAEAQFVAIAD
YHKNRVEADKANLSSYRPLPPEMLYLTPEEWRIRENDAPIHILSEFDEPESDNVMSMSVS
SPRDFSPERARNENIYQALGSHLSGLTKAGTTAIVASYSKGSRARIFDLLKDHDVKGAVL
CDDWASCLSAAPAIALTILPLSSGFRSEDLSLLTEQDIFGDRLVRKSKRRKSSDAFIEEL
SALSLGDLVVHLEHGIGLYEGIVSIPVGDSPHDCVHLKYAGGDKLYVPVENIDVLSRYGE
GGDSVVLDRLGGEGWQRRKSKLKERIRAIAHELLRTAAARALQPATPARVDASEMAGFVD
RFPYQETDDQQQAIEEVLGDMASGKAMDRLVCGDVGFGKTEVAMRAAFAASMAGMQVAII
APTTLLARQHFNNFEERFRPFPVKIGRLSRLVPPAEAKKTKEGLASGEVDIVIGTHALLA
KSIEFQRLGLIIIDEEQRFGVTHKERLKAMKADVHVLTLTATPIPRTLQMAMTGMRELSV
IQTPPVDRLAVRTYVMPWDPVPLREALLREHYRGGQSFVVVPRIADLADIEDFFKKHAPE
LTYVVAHGQMPPATVEERMSAFYDRNYDVLLSTTIVESGLDIPSANTLIIHRADRFGLAQ
LYQLRGRVGRSKTRAYAYMVTPKDRIITEKAEKRLKILGDLDSLGAGFELASHDLDIRGA
GNLLGDEQSGHIKEVGFELYQSMLEDAILEAKAKGSGLQATTDSFSPQITVDAPILIPEA
YVPDLSLRMGLYRRMNGLKTLQEIESFAAEMIDRFGDLPIQTDNLLKLMHIKMNCVKAKI
AKIEMGPRGALVTFHNDSFPNVPGLLDYVDRLKGTAKIRPDNKLFIERKWRDPKSRLHGL
TQLTTGLSKLAQRVSA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttatccagatagattattatccgccgaacaaggcatgaccatagccggtgtgccg
gctggctatcgcccgctgttcctgtcggaagttgcgacccaatcgggccggcgcacgata
tttatcgcgaccgatgacgcggcgatgagcgcggttgtcgaagcggcccgcttttttgca
cccgatctcgatatcatcgaatttccggcttgggactgcctgccttatgaccgtgcttcc
ccggctcttcacaccacttcggaccggctcgcagccctggctaaactggctcagccgttc
tcgggcgcgcagttgctggtcacgacggtaaacgcggtaacccagcgcgtactagcgcca
tcgcgaatcaaggaatttgttacccgcctggcacccggcacgatcgtcgagcaggaaaag
ctgatttcatttctctatgccaacggatttgtccgcgtcgacacggtggctgacagcggc
gaatttgcggcccgtggcggtctgatcgatctcttcccgccgggcgccgagctgcccatc
aggatcgaccttttcggcgacgaaatcgaaacgctgcgacagttcgatcccgcagaccag
cgaaccgtcggcaatattgatagtctggaactgctcccggtatcggaattcctgctggac
ccggagagcattacgcgttttcgcacgcgctatcgcgatctctttggcgcggttgcgaca
agcgacgcactctatcagtccatatcggaaggacgccgtctggcagggatggaacattgg
ctgccgctgctcgaagaccagctcgcaaccattttcgattatgtcggggatgacagtctg
atcttgcgggatacggctggaactgcagcggcagaggcgcaatttgtcgccattgcggat
tatcataagaaccgggtcgaagccgataaggccaatctgtcgagctaccgcccgctaccc
ccggaaatgctctatctgacgccggaagaatggcggatccgcgagaatgacgcgcccatc
catattctaagcgaatttgacgaaccggaatcggacaacgtcatgtcgatgtcggtgtct
tcaccccgcgatttttctccggaacgagcccgcaacgagaatatttaccaggcactgggc
agccatctcagcggcctgacaaaggccggaaccacggccatagtcgccagctatagcaag
ggatcgcgcgcccgtatcttcgaccttctcaaggaccatgatgtcaagggagccgtgctg
tgcgatgattgggcatcctgcctctcggctgcgcccgcaatagcactgacaatcttgccc
ctgtcttccggattccgatcggaagacctgtctttgctcaccgaacaggatattttcgga
gaccggctggttcgcaagtcgaagcggcgcaaaagcagcgatgccttcatcgaggagctg
tccgcgctcagtctgggcgatttggtggtgcatctcgaacatggcatcggactttacgaa
ggcatcgtctcgattccggtcggcgacagtccgcatgattgcgttcatctcaaatatgcc
ggcggtgacaagctatatgtccccgtggaaaatattgatgtcctcagccgctatggcgaa
ggcggtgacagtgttgtgctcgaccgtctgggtggcgaaggctggcaacggcgcaagtcg
aagctgaaggaacgcatccgggcgattgcccatgagctgctgagaactgcagcagcccgg
gctttgcaaccggcaacccccgcccgcgtggacgcgagcgagatggcgggcttcgtcgac
cgcttcccatatcaggaaaccgatgaccagcagcaggcgatcgaggaagttctcggcgac
atggcatccggcaaggcgatggaccgcctggtctgtggtgatgtcggtttcggcaagacc
gaagtcgcgatgcgcgctgcctttgccgcctcaatggccggtatgcaggttgcgatcata
gcaccgacaacgcttcttgcacgccagcatttcaacaatttcgaagagcgttttcgcccc
tttcccgtcaagatcggtcggctgtcccgtctggtgccaccagcggaagccaagaagacc
aaagaaggcctggcgagcggtgaagtcgacattgtgatcggcacgcatgccctgctcgcc
aaatccatagaattccagcggctcggcctgatcattatcgatgaagagcaacgtttcggg
gtcacccataaggaacgattgaaggcgatgaaggcggatgtgcacgtcctcaccctgacc
gccacgcccattcctcggacgttgcagatggcgatgaccggcatgcgcgaactgtcggtc
atccagactccgcctgtcgaccggctggcggtgcgcacctacgtcatgccatgggacccg
gtaccgctgcgcgaagcgctgttgcgcgaacattatcgcggcggccagtctttcgtggtc
gtgccgcggatcgcggatcttgccgacatcgaagatttcttcaagaaacatgcacccgag
ctcacctatgttgttgcccatggacagatgccgccggcaaccgtggaagagcggatgtcc
gctttttacgaccgcaattatgatgtgctgctttcgaccactatcgtcgaaagcggtctc
gatattcccagcgcgaacacactgatcatccaccgcgccgaccggttcggcctggcccag
ctctatcagctgagaggccgtgtcgggcgctctaaaacgcgcgcttatgcctatatggtg
acgccgaaagaccggatcattaccgagaaggcggagaagcgactgaagatcctcggcgat
ctggacagccttggtgccggctttgagctcgccagccatgatctggatatccgcggtgca
ggcaacctgctgggcgacgagcaatcggggcatatcaaggaagtcggcttcgaactttac
cagtcaatgctggaggatgcgattctcgaggcgaaggccaagggctccggcctgcaagcc
accaccgacagcttctctccgcagatcacggtcgatgcgcccatattgataccggaagct
tatgttcctgatctttcactccggatggggctctatcgccgcatgaacgggcttaaaacc
cttcaggaaatcgaatcctttgccgcggaaatgatcgaccggttcggcgacctgccgata
cagaccgacaatctgctcaagctcatgcatatcaagatgaattgcgtgaaagcgaagatt
gcgaaaatcgagatggggccgcgcggggctctggtcacgttccacaacgacagctttccc
aacgtcccgggcttgctcgattatgtcgaccgtctcaaggggactgccaagatccggccc
gacaacaagctgttcatcgaacgcaagtggcgcgatcccaagtcccgcctgcatggcctg
acccaattgacgaccggcctatcgaaactcgcgcagcgcgtgtctgcctag
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