Sphingorhabdus sp. YGSMI21: CHN51_16655
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Entry
CHN51_16655 CDS
T05308
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy03030
DNA replication
sphy03430
Mismatch repair
sphy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHN51_16655
03430 Mismatch repair
CHN51_16655
03440 Homologous recombination
CHN51_16655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphy03032
]
CHN51_16655
03400 DNA repair and recombination proteins [BR:
sphy03400
]
CHN51_16655
Enzymes [BR:
sphy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CHN51_16655
DNA replication proteins [BR:
sphy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CHN51_16655
DNA repair and recombination proteins [BR:
sphy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CHN51_16655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
DUF655
tRNA_anti-codon
STAS
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
ATW04977
UniProt:
A0A2D3RIG5
LinkDB
All DBs
Position
complement(3482482..3485985)
Genome browser
AA seq
1167 aa
AA seq
DB search
MAQIPFVHLRTFSAYTILDGAMEPAAIGAAAKERGFPAVALCDRIGLFASMAFDDGCRAQ
GVQPITGCFLRVARPGGTDPSKPVLDWIALYAQDAEGYENLCKLVSASHLDRPGELDAHV
PFEMLGGHSNGLIVLTGGGEGALARLVAEEQQSEAEAYLSLLQQYFPGRLYIELSRREDP
VEMAAEAGLIALAMDRNIPLVATNPSCFSEPDFHEAHDAMKCIAQSAYVENDEREKPSRH
LWMKSALVMEDLFSDLPEALQNTLVIAQRCAFSPPKRDPILPSLAGDLDGEIEQLRKDST
AGLERRLAFVNLTDEEERKVYFDRLAFELDVIVSMGFPGYFLIVADFIKWAKDHDIPVGP
GRGSGAGSVVAWALTITDLDPIKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQE
KYGDRQVAQIITFGKLKARAVIRDVGRVLQMPYGQVDRLTKLIPNHPTDPWDLKRSLNGI
TELAQEYKQSDVKRLFDLAMKLEGLPRHSSTHAAGVVIGDRPLDQLVPLYRDPRSDLPVT
QFDMKFVEKAGLVKFDFLGLKTLSVLKKAVELLAERGITVELENLSWEDEKVFELLQRGD
TVGVFQLESEGMRRTLAAVKPTNFGDIIALVSLYRPGPMDNIPLFGDRKNGRVEIAYPHP
LLQDILKETYGIFVYQEQVMQAAQIIAGYSLGEADLLRRAMGKKIQAEMDVQRKRFVTGA
AENGLNSDQANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPHEFYAASMCFDM
HQSEKLSIFVDDMKRLGVTVLQPAINKSRPNFSVEEQPDALLAVRYALAGLKNVGEKAMQ
SLVAERAQSGPFSSIEDFANRIDPHGLNKRQLESLASAGAFDDLEPNRAAVHDGADMILS
VANSAADARESGQGGLFGEGSVGGDMQAIRLPENSNWSLNEIMVRERDAFGFYFSSHPVS
QFQAVSSSLGAMTYAALCSGEPIGEGIRKPAVMSALIEKVRWRDSRRGKRFALADLSDSS
GQFSASCFDEDQCKILEELSQEGRCALLKVELDQQSEDENPRVAIRTVQPLDGLEKTTRT
RMELEVRDIAGLHELTNLVAPLLGGQSEIVATMAGPDDDPVKVCLGRSFRLDAETVEMLE
RVHGLANVRLGPARPMRVAKPKLRLVS
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattcctttcgtccatctccgtaccttttctgcctatacgatcctggatgga
gcgatggagcccgcagcgattggcgctgcggccaaggagcgcggttttccggcggttgcg
ctgtgcgaccggattggtcttttcgcttcgatggcgttcgatgacggctgtcgcgcccag
ggggtgcagccgattacgggttgcttcctgagggttgcgcgacccggtggcactgacccg
tccaaaccggtgctggattggatcgcgctctatgcgcaggatgccgaaggctatgaaaat
ctttgcaagctggtgtcggcttcgcatctcgaccggccaggcgaactggacgcccatgtt
cctttcgaaatgctggggggacacagcaatggcctgatcgtcctgaccggaggcggcgaa
ggcgcgctggcgcgactggttgcagaggagcagcaatcggaagccgaagcctatctgtcc
ctgttgcagcaatatttcccgggacgactctatatcgaattgtcccgccgcgaggacccg
gtcgaaatggcagcggaagccggtctgatcgcgctggctatggatcgcaatattccgctg
gtagcgaccaatcccagctgcttttccgaacctgatttccacgaagcccatgatgcgatg
aaatgtatcgcgcaatccgcctatgtcgaaaatgacgagcgggagaagccgtcgcgccat
ttgtggatgaaaagcgccctggtgatggaggacctgttctccgatttgcccgaagccttg
cagaatacgcttgtcatcgcccagagatgcgccttttcgccacccaaaagagatccgatc
ctgcccagtctggcgggtgatctggacggggaaatcgaacagttgcgcaaagattccacc
gccggtctcgaacggcggctggcgttcgtcaatctgacggacgaagaggaacggaaagtc
tatttcgaccgtctggccttcgagctggacgtgatcgtcagcatgggctttcccggctat
ttcctgatcgttgccgactttatcaaatgggcgaaggatcacgacattccggtcgggccc
ggccgtggttcgggtgccggctcggtcgttgcatgggcgttgacgatcaccgatcttgat
cccatcaaactcggattgctgtttgaacgtttcctcaatccggaacgtgtgtcgatgccg
gatttcgatatcgatttctgcgaaacgcggcgcggcgaggtcattcgctatgtgcaggaa
aaatacggcgaccggcaggtggcccagatcatcaccttcggaaagctgaaggcgcgcgcg
gtgatccgcgatgtcgggcgggtgctgcaaatgccttacgggcaggtcgaccggctgacc
aagttgatacccaaccatcccaccgacccctgggatctgaagcggtcgctcaacggcatc
accgaactggcgcaggaatataagcagtccgacgtgaagcgattgttcgaccttgccatg
aagctcgaaggtctgccgcggcacagctcgacccatgctgccggcgtggtcattggcgat
cgcccgctcgatcagctggtgccgctgtaccgcgatccccgctcggacctgccggtaacc
cagttcgatatgaaatttgtcgaaaaagccggtctggtgaagttcgactttctcgggctg
aagacgctctcggtgttgaaaaaggcggtcgaactgctcgctgaacgcggcataacggtc
gagctggaaaacctgagctgggaagacgagaaagtgttcgagctgctccagcgcggcgac
actgtcggtgtgttccagctggaatccgaaggcatgcggcgcacgctggccgcggtgaaa
ccgaccaacttcggcgatattatcgcacttgtttcgctctaccggccgggaccgatggac
aatatcccgctgttcggcgaccgcaagaacggccgggttgaaatcgcctatccgcatccg
ttgttgcaggacatcctgaaggaaacctacgggattttcgtctatcaggaacaggtgatg
caggcagcgcagatcatcgccggctattcactcggcgaagcagatttgctgcgtcgcgcg
atgggcaagaaaatccaggcggagatggacgtccagcgcaagcggttcgtgacgggcgcc
gcggaaaacggtctgaacagcgatcaggccaacgagctgttcgacttgatcgacaaattt
gccggctatggtttcaacaagagccacgcggcggcttatgctctgctcgcctatcagacg
gcctggctgaaggcgcatcatccgcatgaattctacgccgcctcgatgtgcttcgacatg
caccagtccgagaagctcagcattttcgtcgatgacatgaagcggctgggcgtaaccgtc
ctgcagccggcaatcaacaagagtcggccgaatttctcggtggaggaacagcctgacgcg
ctgctcgccgtccgctatgcgctggcgggtctgaaaaatgtcggcgagaaggcgatgcag
tcgctggtcgccgaacgtgcccagagcgggccgttctcgtcgatcgaggattttgccaac
cggattgatccgcacggcctcaacaagcgccagctggaaagcctggcctcggccggagct
ttcgacgatctggagcccaatcgcgcggcggtccatgacggcgcggacatgatactctcg
gtcgccaacagcgccgccgatgcgcgcgaaagcgggcagggcggcctctttggagaaggc
agtgtcggcggcgatatgcaggcgatccggttgccggagaacagcaactggtcgctcaac
gagatcatggtccgcgagcgcgatgccttcggcttctatttctcctcgcacccggtgtcc
cagttccaggcggtatcatcctcgctcggcgcgatgacctatgcggcattgtgcagcgga
gaaccgattggcgagggcattcgcaagccggcggtgatgtccgcgcttatcgagaaagtg
cgctggcgcgacagccgacggggcaagagattcgcgctcgccgacctctccgacagcagc
ggacaattttccgccagctgcttcgacgaggaccagtgcaagatattggaagagctgtct
caggaggggcgctgcgccttgctcaaggtcgagctggaccagcagtcggaagacgaaaat
ccgcgggtggcgatccggacggtccagccgctcgacgggctggagaaaacaacccgcacg
cgaatggagctggaagtccgggacattgccggtctgcacgagctgaccaatctggtcgcc
ccgctgcttggcggccagagcgagatcgtcgctaccatggcgggacccgatgatgatccg
gtcaaagtctgtctcggccggtccttccggctggatgccgaaacggtggagatgctggaa
cgggttcatgggcttgccaacgtccgtctggggccggcccgaccaatgcgggttgcaaaa
cccaaattaaggcttgtcagctag
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