Sphingorhabdus sp. YGSMI21: CHN51_17455
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Entry
CHN51_17455 CDS
T05308
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy03420
Nucleotide excision repair
sphy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHN51_17455
03430 Mismatch repair
CHN51_17455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphy03400
]
CHN51_17455
Enzymes [BR:
sphy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHN51_17455
DNA repair and recombination proteins [BR:
sphy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHN51_17455
MMR (mismatch excision repair)
Other MMR factors
CHN51_17455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ATW05114
UniProt:
A0A2D3RHA8
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All DBs
Position
3650540..3652837
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AA seq
765 aa
AA seq
DB search
MSEPVKQPQENDPPYVRGLNAPQRQAVLTSEGPVLVLAGAGTGKTAALTRRIAHIVYSRK
AWPSEILAVTFTNKAAREMKERIATIVGENFEGMPWLGTFHSIGAKMLRRHAEMVGLQNN
FTILDTDDQIRLLKQLIQAEDVDDKRWPARMLAGLIDQWKNRGLNPQDLDANEAERYDNG
KGQHFYTLYQARLKALNACDFGDLLLHSLNLLKNHREILERYQRQFKYILVDEYQDTNSS
QYLWLRLLAQSHKNICCVGDDDQSIYSWRGAEVANILKFEKDFPEATVVKLEQNYRSTPH
ILAAASGLINHNSGRLGKTLWTEETEGDKVQVIGVWDGPEEARRTGDEIEALQQIKQVSL
NDIAILVRAQFQTREFEDRFISIGMPYKIIGGFRFYERAEIRDALAYLRVITQPADDLAF
ERIVNTPKRGLGDKTVEKVHRLARAQGIPLAAAALSICDTDELPPRARNTLLELMRNFGR
WREMAADTDHAELTRIVLDECGYTTMLQADRSTEAAGRLENLTELARAMEEYETLGDFLE
HVSLVMDNDARDDEPKVTIMTMHGAKGLEYDHVFCAGWEEGVFPSQRSLDEGGNASLEEE
RRLAYVAITRAKKKCTIFHAANRRIYGQWTSSIPSRFIDELPKDHVEHESSMSGGESLWR
ANWSENSDPFAHLAATNATRAGKRGPGWQRAASSNFDKNPRVIKEARRSAVSLGNKGRDD
VTVGMRVFHTKFGYGEVKVKEGNKLEIAFEKSGDKRVLDSFVEVA
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacctgtcaaacaaccgcaagagaatgatcccccctatgtccggggattgaac
gcgccacagcgtcaggccgtcttgaccagcgaagggccggtgctggtgctggcaggtgca
ggcactggcaagaccgccgccctcacccgccggatcgcccatatcgtctattcccgcaag
gcctggccgagcgaaattctggcggtgacctttaccaacaaggccgcccgcgagatgaag
gagcggatcgcgacgattgtcggcgagaatttcgaaggcatgccgtggctcggcaccttc
cacagcatcggcgcgaaaatgctccgccgccatgccgagatggtcggcctgcagaataat
ttcaccattctcgacaccgatgaccagataaggctgctcaagcagctgatccaggccgag
gacgtggacgacaagcgctggcccgcccggatgctcgccggcctgatagaccagtggaag
aaccgcggcctcaatccgcaggatctcgatgccaacgaggccgagcgctatgacaatggc
aagggccagcatttctacacgctttatcaggcgcggctgaaagccctcaacgcctgcgat
tttggcgacttgctgctgcattcgctgaacctgctcaaaaatcaccgcgaaattctggaa
cgctaccagaggcagttcaaatatatattggtcgacgaatatcaggacaccaacagctcg
caatatctctggctgcggctgctcgcgcagagccacaagaatatctgctgcgtcggcgat
gatgaccagtcgatctacagctggcgcggcgcggaagtcgccaatatcctgaaattcgaa
aaggattttcccgaagccacggtggtcaagctggagcagaattaccgctcgacgccgcat
attctcgccgccgcatcggggctgatcaatcacaatagcggtcgcctcggcaagaccctg
tggaccgaagaaaccgaaggcgacaaggtgcaggtgatcggcgtctgggatggtccggaa
gaagcccggcgcaccggcgacgagatcgaggcgctgcagcagatcaaacaggtctcgctg
aacgatatcgcaatcctcgtccgcgcccagttccagacccgcgagttcgaggatcgtttc
atctcgatcggcatgccgtacaagatcatcggcggtttccgcttttacgaacgcgccgaa
atccgcgatgccttggcctatctgcgcgtcatcacgcaacctgcggatgacctcgctttc
gagcggatcgtcaacacacccaagcgcggcctgggcgacaagacggtcgaaaaagtccac
cgtctggcccgcgcacaaggcattccgctggccgcagcggcgctcagcatctgtgatacc
gatgaactgccaccgcgcgcgcgcaacactttgctcgagctgatgcgcaatttcggccgc
tggcgcgaaatggcggcggataccgatcatgccgaactcacccggatcgtgctcgacgaa
tgcggctatacgacgatgctgcaggccgaccgctcgaccgaagccgctggccgtctggag
aatctgaccgagcttgcccgcgcgatggaagaatatgagacgctcggcgatttcctcgaa
catgtcagcctggtcatggacaatgatgcccgcgacgacgagcccaaggtcacgatcatg
accatgcacggcgccaagggtctggaatatgaccatgtgttctgcgccggctgggaggaa
ggcgtcttcccctcgcagcgcagcctcgacgagggcggcaatgccagcctcgaggaagaa
cgccgcctcgcctatgtcgcgatcacccgggcgaaaaagaaatgcacgattttccacgcc
gccaaccggcggatctacggccagtggaccagctcgattccctcgcgcttcatcgacgag
ctgccgaaggaccatgtcgagcatgaaagcagcatgagcggcggcgaaagcctgtggcgc
gccaactggagcgagaatagcgaccccttcgcccatctcgccgcgaccaacgcgaccaga
gccggcaaacgcggccccggctggcagcgtgcggcatcctctaacttcgacaagaatccc
cgcgtcatcaaggaagcccgccgcagcgccgtatccctcggcaacaagggccgcgacgat
gtcacggtcggcatgcgcgtcttccacacaaaattcggctatggcgaagtgaaggtgaag
gaaggcaacaagctggaaatcgcgttcgagaagtcgggcgacaagcgggttctggacagt
tttgtcgaggtggcttga
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