Sphingorhabdus sp. YGSMI21: CHN51_18030
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Entry
CHN51_18030 CDS
T05308
Name
(GenBank) RNA degradosome polyphosphate kinase
KO
K00937
polyphosphate kinase [EC:
2.7.4.1
]
Organism
sphy
Sphingorhabdus sp. YGSMI21
Pathway
sphy00190
Oxidative phosphorylation
sphy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09100 Metabolism
09102 Energy metabolism
00190 Oxidative phosphorylation
CHN51_18030
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHN51_18030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphy03019
]
CHN51_18030
Enzymes [BR:
sphy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.4 Phosphotransferases with a phosphate group as acceptor
2.7.4.1 ATP-polyphosphate phosphotransferase
CHN51_18030
Messenger RNA biogenesis [BR:
sphy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CHN51_18030
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PP_kinase_C_1
PP_kinase_C
PP_kinase
PP_kinase_N
PLDc_2
Gcd10p
Motif
Other DBs
NCBI-ProteinID:
ATW05215
LinkDB
All DBs
Position
complement(3769958..3772147)
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AA seq
729 aa
AA seq
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MENPAAESPDADVLPADTVPVASTEESGKRYFNREISWLGFNERVIEEAENSAHPLLERL
RFLSISGNNLDEFFMVRFAGLVGQYRQKIEERSADGLTATQQLEAIAARTDLLIEHQQRV
WAALSRTLAEEDIFVSAVADLSEDSKSWLRQHFIDQIFPVLTPQALDPAHPFPFIPNKGL
SLVFDLVRESDNQGIRELVMIPSGLARFIRLPGESAIYVSVETAIQEFSDILFPGYAVKN
SGLFRIIRDSDIEVEEEAEDLVRYFRSAIKRRRRGDVIRLEMGPNLAEPVIAMLRENLLD
DGATESRINGLVGVGDLDILVEEDRPDLKFTPYSPRFPERIRDHGGDCFAAIRDKDILVH
HPYESFEVVIEFLRQAAADPDVVAIKQTLYRAGKQSAVIRALIDAAEAGKSVTAIVELKA
RFDEEQNLLWASALERAGVQVVYGFIEWKTHAKISMVVRKEQEGYRTYCHFGTGNYHPVT
AKIYTDLSFFTADPRAARDAAQLFNYITGYVEPKALELISMSPRDMRNDLMGLIDQEIAN
VRAGKPGMVWAKMNSLVDPALIEKLYQASNAGVEIDLVVRGICCLRPDVPGMSDHIRVKS
VVGRFLEHSRIWAFGNGRELPNDGAKLYISSADWMPRNLDRRVEYMMPITNKTVHDQILD
QVMVANLIDDEQSWELNADGSYTRVKPSDKPFNLHRYFMTNPSLSGRGKALKKSNAVPRL
SLRRRKKKA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcctgctgcagaatcgcctgatgcggatgtgctgcctgcggatactgtcccc
gttgcctcgacggaggagagcggtaagcggtatttcaatcgggaaatcagctggctaggc
tttaacgagcgggttatcgaagaggccgagaacagcgcccatccgttgctagaacggctg
cgctttctgtcgatatccgggaacaatctggacgagtttttcatggttcgcttcgccgga
ttggtcggacaatatcggcagaaaatcgaggaacgttcagccgatggcctgaccgccacg
cagcagttggaagcgatagcggcccggacagatttgctgatcgaacatcagcaacgggta
tgggcggccctgtccagaacgctggctgaggaagatatttttgtctcggctgtggccgac
ctgtccgaggattcgaagagctggctcaggcagcatttcattgaccagatattcccggta
ctcaccccgcaagcgctcgatccggcccatcccttccccttcattcccaacaaggggctg
agccttgttttcgatctggtcagggaatccgacaatcagggtatcagagaactggtgatg
atcccgtcgggcctcgcgcgcttcatccgcttgcccggagaatcggcaatctacgtttcg
gtcgagacggcgattcaggaattttccgatatcctgtttccgggctacgccgtgaaaaac
agcggactgttccggatcatccgcgacagcgatatcgaggtggaggaagaggctgaagat
ctcgtccgctatttccgcagcgctatcaaacgccgacgccgcggtgatgtgatccggctg
gaaatggggccgaatcttgccgaaccggtgatcgcgatgttgcgggaaaatctgctcgat
gacggggccaccgaaagccgcatcaacgggctggtcggcgtcggcgatctcgacatattg
gtcgaagaagaccgtccggatctgaaattcacgccgtatagtccgcgttttcccgagcgt
atacgggatcatggcggcgactgtttcgccgcgatccgggacaaggatattttggtccat
catccctatgaatcgttcgaggtggtgatcgaatttttgcggcaggctgctgccgatccc
gatgtggtggcgatcaagcagaccttgtatcgcgccggcaagcaatccgccgttatccgt
gcgctgatagatgctgccgaagcgggtaaatcggtgaccgcgattgtcgaactcaaggcc
cgttttgacgaagagcagaatctgctctgggcaagcgcgttggaaagggcaggcgtccag
gtcgtctacggatttatcgaatggaagacgcatgcgaaaatatcgatggtcgttcgcaag
gaacaggaaggctatcgcacctattgccattttggcactggcaattaccatccggtaacc
gccaaaatctataccgatcttagcttcttcaccgccgacccgcgagccgcgcgcgatgcg
gcgcaattgtttaattatatcaccggctatgtcgagcccaaggcgttggaacttatttcc
atgtcaccccgcgacatgcgcaacgacctgatgggcctgatcgatcaggaaattgccaat
gtccgggccggcaagccgggcatggtctgggccaagatgaattcgctggttgatccggca
ctcattgaaaaactctatcaggcgagcaacgccggtgtcgaaattgatctggtggttcgc
ggtatttgctgcctcaggcccgatgtgccgggcatgtccgaccatattcgcgtaaaatcg
gtcgttggccggtttctcgaacatagccgcatatgggcctttggcaatggcagggaattg
ccgaatgacggagcgaagctctatatttcatcggctgactggatgccacgaaaccttgac
cggcgtgtggaatatatgatgccgatcaccaacaagaccgtccacgaccagatattggat
caggtcatggttgccaatctgattgatgacgaacagagttgggagctgaatgccgatggt
agctacacgagagtaaagccgtccgacaagccgttcaacctgcatcgctatttcatgacc
aacccgtctctttccggtcgcggcaaggcgctaaagaaaagcaacgccgtgcctcgtctc
agcctgcgtcgccgcaagaaaaaggcgtga
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