Sphingobacterium sp. CZ-2: E3D81_05995
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Entry
E3D81_05995 CDS
T06166
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sphz
Sphingobacterium sp. CZ-2
Brite
KEGG Orthology (KO) [BR:
sphz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphz03016
]
E3D81_05995
Enzymes [BR:
sphz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
E3D81_05995
Transfer RNA biogenesis [BR:
sphz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
E3D81_05995
Prokaryotic type
tRNA splicing ligases
E3D81_05995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QBR11744
LinkDB
All DBs
Position
complement(1321727..1323148)
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AA seq
473 aa
AA seq
DB search
MENKRINGNDLLALGYKENRALGIALKINSKRHGLKRDEMLQKFKEVLADPESFSEDAIF
EPLAKALLFPEEKDTNIIPLKESTDAYAVYGEEHIEEGARKQMDVAMRLPVSVAGALMPD
AHQGYGLPIGGVLATENAIIPYAVGVDIGCRMALSIFDMEDVALLEKHDWLKKIILQNTR
FGAGNGFLKHERLDHEVLENPLFQEIPFISNLKDKAWTQLGSSGGGNHFVEFGSINFEQE
DQELGIPAGKYLALLTHSGSRGLGATIAGHYTKLAKELCKLPYQAQHLAYLGMDTEAGQE
YWNAMNLAGDYASACHEVIHEKVLKDLGVDRMAKIENHHNFAWKEQYKGKELMVHRKGAT
PAAEGVLGIIPGSMASDGFLVRGKGVESSINSASHGAGRQMSRTQAIKNLKKQDMLQMLN
DQGVTLIGSNMDEAPMAYKDIHTVMAAQEDLVDIVANFSPKIVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaacgtataaatgggaatgatttattagccttaggttataaagaaaaccgt
gcattaggtattgccctaaagatcaatagcaagcgtcatggattaaaacgtgatgaaatg
cttcagaaatttaaagaggttttagctgatccggaatccttttcggaagacgcgattttc
gaacccttggcgaaagctttattgtttcccgaggaaaaggacaccaacatcattccatta
aaagaatcaacggatgcctacgccgtatatggggaagaacatattgaagagggggcaaga
aagcagatggatgttgctatgcgattaccggtgtcggtagcgggtgctttgatgcctgat
gcccaccagggatatggtttaccaatcggcggggtattggcaacggaaaatgccattatt
ccttatgctgtaggggtggatatcggatgtcgaatggccttatccatctttgatatggaa
gatgttgccttactggaaaaacacgattggcttaaaaagatcattttgcagaacacccgg
tttggagctggcaatggttttttaaagcatgagcgattggatcatgaagtgttggaaaat
cctttattccaagaaatcccctttatttcgaatttgaaggataaggcttggacacagttg
ggatcctcaggaggagggaaccatttcgtagaatttgggtcgattaattttgagcaagag
gaccaggaattaggtatccctgcagggaaatacctcgctttgttgacccactctggttct
cgtggacttggcgctaccattgccggacattataccaaattggctaaagagctgtgtaaa
ctcccttaccaagcacaacatttagcatatttggggatggatacagaagccggtcaagaa
tattggaacgccatgaacctggcgggtgattatgcatcagcctgccatgaggtgatccat
gaaaaggtgttgaaggatctgggggtagataggatggccaagattgaaaaccatcataat
ttcgcttggaaagagcaatataaaggcaaagaactgatggtgcatcgaaaaggagctact
cctgctgcagagggtgtccttgggattatcccaggatccatggcatccgacggcttcttg
gttcgagggaaaggagtggagtcgtcgatcaactctgcttcccatggggctggtcgtcaa
atgagccgtacccaagccattaaaaacctgaaaaaacaggacatgctgcaaatgttgaac
gatcagggagttacccttatcggttccaatatggatgaggcaccaatggcttataaggat
attcataccgtgatggccgcccaagaagatctggtggatattgtggccaatttttcacca
aaaatagttcgaatggccgatgacggttcccgagaggattaa
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