Sphingobacterium sp. CZ-2: E3D81_07655
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Entry
E3D81_07655 CDS
T06166
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sphz
Sphingobacterium sp. CZ-2
Pathway
sphz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3D81_07655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphz03019
]
E3D81_07655
03400 DNA repair and recombination proteins [BR:
sphz03400
]
E3D81_07655
Enzymes [BR:
sphz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E3D81_07655
Messenger RNA biogenesis [BR:
sphz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3D81_07655
DNA repair and recombination proteins [BR:
sphz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
E3D81_07655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF6945
Motif
Other DBs
NCBI-ProteinID:
QBR12044
UniProt:
A0A4P7DXL8
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All DBs
Position
complement(1711376..1713304)
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AA seq
642 aa
AA seq
DB search
MFGRIRHMEKTSLEILKQYWGYDRFRPLQEAIIHDVLLGKDTLGLMPTGGGKSLCFQVPS
LQMEGICIVISPLIALMKDQVENLRKRDIPAIAIFSGMSYREVDIALDNCIFGNIKFLYL
APERLYLDLIQERIRHMKVNLFAIDEAHCISQWGYDFRPPYLELSKLRELQPNVPFLALT
ATATPKVVEDIQEKLGFRERNEYRMSFRRENLGYMVFDEENKMNRMLRVIKKMGGSGVIY
VRNRRETQEVARFLLNHGVPADFYHAGLDMPSRMKKQEAWTNNQVRVIVATNAFGMGIDK
PDVRFVVHLDLPDSLEAYYQEAGRAGRDGKKAFPVLLYQQADRDNLWLNIENDFPDVKFI
QQVYHYLCNYFQIAYGAGKGLVYDFDLVEFAKKYKLEVLKTISALKFLERDRWLSLSESV
YIPARFKFEVDFQELYKFQVQSAFFDPLIKAIQRLYGGVYDYFVPINEFELAKLIKKPYE
EVVKMLTMMQTQEIATYLPKTDAPQLEFLQARVDYKNLYIDTQFIAMRKAYKQEQVKAIY
QYLDEKHCRSLAIQRYFGEEGEEVCGACDLCLTRDFKTNESEKIALEIQQLLIAKPMYLY
ELIEALQIGKEELRLQTLRSLLDQQKVLLQDGLYSWNGLLYR
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggagaataaggcacatggaaaagactagtctggaaatattaaagcagtattgg
ggatacgatcggtttcggcctttgcaggaagccatcatccatgatgtattattaggaaag
gacaccttaggcttgatgccaaccggtggaggaaagtccctttgttttcaggttccaagc
ctgcagatggagggtatatgtatcgttatttctcctttgatcgccctaatgaaagatcaa
gtcgagaacttgcgtaaaagagatattcctgccatagccatcttctcaggaatgagttac
cgtgaggtggacattgcgttggacaactgcatctttgggaacatcaaattcctttatcta
gcaccagaaaggctctatttagatcttatacaggagcggatcaggcatatgaaggtcaat
ctctttgccatcgatgaagcacattgtatttcccaatggggatacgacttcaggccacct
taccttgaattatctaaactccgtgaactccaacctaatgttcctttcttggcattaacg
gccacggccacacccaaagtggtagaggatatccaagaaaagctaggatttcgagaacgg
aatgaataccggatgagtttccgaagggaaaacctaggttatatggtttttgatgaggag
aacaagatgaaccgcatgttgcgtgtcatcaagaagatgggaggctcaggggtaatctat
gtaaggaataggcgggaaacacaggaggtagctaggtttttgctcaaccacggggtacct
gctgatttttaccatgctgggcttgatatgcctagcaggatgaagaaacaggaagcctgg
acaaataaccaagtacgggtcattgttgccaccaatgccttcggcatggggatcgataag
cccgatgttcgcttcgttgtccatttggacttaccggattccttggaagcctattatcaa
gaagcaggaagggccggaagggatggcaaaaaagcattcccggtattgctctatcaacaa
gctgatagggataacctttggctaaatatcgaaaatgattttccggatgttaaatttatc
caacaggtatatcattatctttgcaattatttccagatagcctatggtgctggaaaaggc
ctggtctatgattttgacctcgttgaatttgctaaaaaatataaactggaggttctaaag
accatcagtgccctcaaatttctggaaagggaccgatggttgagtttgagtgagtcggtc
tatattcctgctcgatttaaatttgaagtggactttcaggaactctataaattccaagtg
caaagcgcctttttcgacccattaataaaagctatccaacgtctctatggaggagtttat
gattattttgtgcccatcaatgagtttgaattggcaaagctgatcaaaaagccttatgag
gaagtcgttaagatgctgaccatgatgcagacccaggaaatcgcgacttatcttcccaaa
accgatgcgccacaattggaattcctgcaggctagggtagattataaaaacctctacatc
gatacccagtttattgcgatgcgaaaggcctataaacaggagcaggtaaaggccatctac
caatatctggacgaaaagcattgtcgaagtttggctattcaacgctattttggcgaggaa
ggcgaagaggtatgtggtgcctgcgacctctgccttacccgcgatttcaaaaccaacgag
tccgaaaaaatagccttggaaatccagcaacttttgatcgcaaagcccatgtatctgtat
gaattgatcgaagccttacagattggcaaggaggaactccgcctgcagaccttgcgcagc
ctactggaccagcagaaagtcctccttcaggacgggttgtattcctggaatggtctatta
taccgataa
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