Sphingobacterium sp. CZ-2: E3D81_08915
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Entry
E3D81_08915 CDS
T06166
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sphz
Sphingobacterium sp. CZ-2
Pathway
sphz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3D81_08915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphz03019
]
E3D81_08915
Enzymes [BR:
sphz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3D81_08915
Messenger RNA biogenesis [BR:
sphz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3D81_08915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QBR12275
LinkDB
All DBs
Position
2016508..2017860
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AA seq
450 aa
AA seq
DB search
MASFEDFKLNKQLLNAVAEAGYTIPTEIQEKAITPVLAGQDVMGIAQTGTGKTAAYVLPM
LMKLKYAQGNDPRALILSPTRELAMQIEENIRLFSTYLDLRTVLLYGGLGPKTQKEKLAK
GCDIIVATPGRFLDLYLEGEINTKSLKFLVLDEADKMMDMGFISKIHRILEIVPRKRQNL
LFSATMSELVRKIAGDFLEFPTVIEVTEQATPAKTVEQSLYHVPNLKTKLNLLQHFFKDD
QAFTRVIVFCKTKTVADNIFGYLERKYGPEAVRVIHANKGQNTRINSINSFKEGSVRILV
ATDVAARGLDVTQVSHVINFDVPIVIEDYVHRIGRTGRAYNTGDAITFCNPAEEYYVAKI
EKLIKQTIPVKEMPAEVVLEKTPFDEKQAIAREIDNQKKKDDPDFKGAFHEKKYAMKMNN
RKSSGRGPGAKGAGKGKGPKKGPSKPGKRR
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatttgaagattttaaactcaacaagcagcttctcaatgcggttgcagaagca
ggctataccattccaacggaaattcaggaaaaagcaatcacccctgttctagcaggacag
gacgtgatgggaattgcccaaaccggaacgggaaagactgcagcttatgtactacccatg
ctgatgaagctgaaatatgcacaaggcaatgaccctcgggcgcttatcttaagccctacc
cgggaattggctatgcagattgaagagaatatccgtttgttctccacctacctggattta
cgtaccgtattattatacggtggtctaggtcctaaaacccaaaaagaaaaactggcaaaa
ggctgtgatattattgtcgctacaccaggtcgcttcttggatctttacctggaaggagag
atcaatacaaaaagcctgaagtttttggtgttggatgaggcagacaagatgatggacatg
ggattcatcagtaaaatccatcggattttggaaatcgtgccacgtaagcgtcaaaactta
ctgttctcggccaccatgagcgaattagttcgtaagattgcaggagatttcttggaattc
ccaactgtaatagaggtgacggaacaagctacacccgccaaaacagtcgaacaaagtcta
tatcatgtacctaatttaaagacgaagctgaatttattacagcatttctttaaggatgat
caggcttttacaagggtcatcgttttctgtaaaacaaaaaccgtggccgataatatattt
ggttatctggagcgtaaatatggaccagaagcggtgcgtgtgatccacgccaataaagga
caaaataccaggatcaattcgattaattccttcaaagaaggatcagtacggatcttggtc
gctacggatgtggcagctagaggattggatgtgacccaggtaagccatgtgatcaatttt
gatgtaccgatcgttattgaagattatgtacatcgcattggccgtacgggaagagcctat
aatactggtgatgcgattaccttctgtaatccagctgaagaatattatgtcgcgaagatc
gaaaagttgatcaagcaaaccattccagtgaaggagatgccagcggaagtggtactggag
aaaacaccgttcgatgaaaaacaagcaattgcccgtgaaatagataaccagaaaaagaag
gacgatcctgatttcaaaggtgctttccatgagaagaaatatgccatgaagatgaacaac
agaaagtcgtctggccgggggccgggagcaaagggcgcaggaaaagggaaaggacctaag
aaagggccttcaaaacctggaaaaagaagatga
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