Sphingobacterium sp. CZ-2: E3D81_11530
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Entry
E3D81_11530 CDS
T06166
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sphz
Sphingobacterium sp. CZ-2
Pathway
sphz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3D81_11530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphz03019
]
E3D81_11530
03009 Ribosome biogenesis [BR:
sphz03009
]
E3D81_11530
Enzymes [BR:
sphz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3D81_11530
Messenger RNA biogenesis [BR:
sphz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3D81_11530
Ribosome biogenesis [BR:
sphz03009
]
Prokaryotic type
rRNA helicases
E3D81_11530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QBR12755
UniProt:
A0A4P7DXH6
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All DBs
Position
complement(2603387..2605189)
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AA seq
600 aa
AA seq
DB search
MNPFLELGIRHEIVSAITELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLP
LLEQLDFSSKQPQALVLCPTRELCLQIARDLEKFAKHLDNVHVVAVYGGANISDQLRQIR
RGVQIVVATPGRMLDIIGRNAIDFSNVRYVVLDEADEMLNMGFQEDINNILSETPDDKKT
WLFSATMPKEVRRIAQNYMTNPFELTVGTKNTGNTNIEHHYYMIKAKDKYAAFKRIVDFY
PEIFGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERNLQLLIATD
VAARGIDVNDVTHVINYSLPDETENYTHRSGRTARAGKTGISISLINVKEMSKIRHIEKI
IGKEFIRKQVPQGTEVCEKQLFAIIDKVHNVEVHEDRINTFLPQILESLQDLSKEEIVKR
FASLEFNRFLNYYEDAPDLNIDGRDNGREREGRDRDGRRQASKGFTRLFINLGSVDEFSR
GDMLSFICNKSKISGKSIGKIDLKGVFTFFEVQDEEVERVFQGFQGVDFNGRNVRIEVSG
EGRSSDRGGRGGSRRSGGDRERGGSYGSRNGGSGRRDRNSGGGFRDFSSGKGRRESKSRY
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatttttagaactgggaatccgtcatgagattgtttctgccatcactgagtta
ggtttcgaaaaaccttctcccatccaggaaaaagccattcctgtattactgactggtaac
gacgattttgtcggattagcccaaacaggtacagggaagactgcggcatttggtcttcct
cttttagaacaactagacttttcatcgaaacaaccacaagcattggtactttgtccaacg
cgcgagctgtgtttgcaaattgcaagagacctagaaaaatttgccaaacatttagacaat
gtgcacgtggttgccgtatatggtggtgcaaacatcagcgatcaattgagacagatccgt
cgcggtgttcaaatcgttgttgctaccccaggtcgtatgcttgatatcatcggccgtaat
gccatcgacttctctaacgtacgttatgtcgtattagatgaagctgatgaaatgttgaac
atgggtttccaagaggacatcaacaatatcctttccgaaactcctgacgacaaaaaaacg
tggttgttttcagcaaccatgcctaaagaagtacgtcgtattgcccaaaactacatgact
aacccttttgagttaactgtaggtacaaagaacaccggtaatacgaacatcgaacaccat
tattacatgatcaaggcgaaagataaatacgctgctttcaaacgcatcgtagatttttac
ccagagatctttggtattgtgttctgtcgtactaaaattgaaacccaagagattgcggaa
gctttgatcaaagatggctacaatgccgattctttacatggtgacctttctcaacaacaa
cgcgataaagtaatgaaacgctatcgcgaacgcaacttgcaattattaattgctacggat
gttgctgctcgtggtatcgacgtaaatgacgtaacacacgttatcaactattcattacct
gacgaaacagaaaactatacccaccgttcaggccgtacagctcgtgccggtaaaacgggt
atctctatttctttgatcaatgtgaaagaaatgagcaaaattcgtcatatcgaaaagatc
attggaaaagaattcatccgcaaacaagttcctcaaggaactgaggtttgtgagaaacag
cttttcgcaatcatcgataaagtgcataacgtagaagtacacgaagataggatcaatacg
ttccttcctcaaatcttagaaagccttcaagatctttccaaagaggagatcgtaaaacgt
tttgcatctttagaattcaatagattcttaaattactacgaagacgctcctgatttgaat
atcgacggtcgtgataatggtcgcgaaagagaaggaagagatagagatggtcgtcgtcaa
gcatctaaaggattcactcgtttatttatcaacttaggttcggtagatgaattcagcaga
ggtgacatgttatccttcatctgtaacaaaagtaagatttctggaaaatcaatcggtaag
atcgatctaaaaggagtatttacgttcttcgaagtacaggatgaagaggtagaacgcgta
ttccaaggcttccaaggtgtagatttcaacggtagaaacgttcgtatcgaagtttctggc
gaaggtagatcttcagaccgcggaggaagaggtggtagtcgtcgttcaggcggagaccgt
gaaagaggtggaagctacggttcacgcaatggtggttcaggtcgtagagacagaaactcc
ggcggtggattccgcgacttctcttctggcaaaggccgtagagaatccaaaagcagatat
taa
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