Sphingobacterium sp. CZ-2: E3D81_13105
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Entry
E3D81_13105 CDS
T06166
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sphz
Sphingobacterium sp. CZ-2
Pathway
sphz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3D81_13105 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphz03019
]
E3D81_13105 (rny)
Messenger RNA biogenesis [BR:
sphz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E3D81_13105 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
MctB
UPF0154
DUF4407
DUF4954
Motif
Other DBs
NCBI-ProteinID:
QBR13052
UniProt:
A0A4P7DZF7
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All DBs
Position
2981110..2982669
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AA seq
519 aa
AA seq
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MEISTTISIIIALVVGVFIGRYLLQMLFKKQEQSAQEKAAQIIKDAEQQAEHVKKQRQLE
AKEKFLQLKAEHEKEVSQRNNTVAQKENTIRQKEQSLNQKLENLNREKQDLDGKAKKLDQ
LVELNEKKKEEVELLKGQHIKQLETIAGLSADEAKEQLVTSLREEARSQAIIQIKDIVDE
AKLTASKEAKKVVIQTIQRTATEAAIENTVSIFNIENDEIKGRIIGREGRNIRALEAATG
VEIIVDDTPEAIILSGFDPVRREIARLSLHRLVTDGRIHPARIEEVVAKTRTQIEDEIVE
IGERTVIDLGIHGLHPELIRMVGRMRYRSSYGQNLLQHSREVANFAATMASELGLNVKHA
KRAGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPDVCNAIGAHHDEIEMTSMISPIVQ
ACDAISGARPGARREVVESYIKRLKELEDLALSYPGVEKTFAIQAGRELRVVVESEKVSD
AQAEILAADLSNRIQTEMTYPGQIKVTVIRETRSVSYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagatatcaactactatatcaataataattgcactggttgtgggtgtttttattgga
cgatatctattacagatgttgttcaagaaacaggaacaatcggcgcaggaaaaggctgca
cagattattaaggatgcagaacagcaggcagagcatgtcaagaaacagcgtcaattggaa
gctaaggagaaattccttcaattgaaagctgagcatgaaaaagaagtaagtcaacgtaat
aatactgttgctcaaaaagagaataccatccgtcagaaggaacaatccctgaaccagaaa
ttggagaacctgaatcgcgagaaacaggatctggacggtaaagctaagaagctagatcaa
ttggtcgagctgaacgaaaagaaaaaggaagaggttgaactattgaaaggtcaacacatc
aagcaattggaaaccattgcaggtctttctgcggatgaagccaaagagcaattggttact
tccctaagagaagaagcaaggtcccaagcgatcattcagatcaaggatattgtggatgag
gcgaaattaacagcgtctaaagaagctaaaaaagtggttatccaaaccatccaacggaca
gcaaccgaagcagcaatcgaaaatacagtatcgatcttcaatattgaaaacgatgagatc
aaaggtcgtatcattggccgtgagggaagaaacatccgtgcactagaagcagcaacaggt
gtggagatcatcgttgatgatacgcctgaggcgattatcctttccggatttgatcctgta
cgtcgtgagattgcaagattatccttacaccgtttggttacggatggtcgtatccaccca
gctcgtatcgaagaggtggttgcaaaaaccagaacacaaatcgaagatgaaattgtggag
attggtgagcgtacagtaatcgatttaggtattcatggtctgcacccggagttgatccgt
atggtaggaagaatgcgttatagatcttcttacggacagaacctattgcagcactcccgt
gaggtggcaaactttgcggcaaccatggcgtcagagcttggattgaatgtgaaacatgca
aaacgtgctggtctattacatgatattggtaaagtgcccgatgataatccagaattgcct
cacgcgattttaggtatgcagttggcagagaaatataaggagcatccagatgtatgtaac
gccatcggagcgcaccacgatgaaatcgaaatgacatcgatgatctctccaatcgtacag
gcatgtgatgctatttccggtgctcgcccaggtgcacgacgtgaagtagtggaaagctat
atcaaacgattgaaggaattggaagatttagctttatcttatcctggagttgaaaagacc
tttgctatccaggctggtcgtgaattacgtgttgtagtggaaagtgagaaagtatccgat
gcccaagcagagattttggcggctgatctttcgaaccgcatccaaacagaaatgacctat
ccaggacagattaaagtaacagtaattcgtgaaacacgttcggtttcctacgcgaaataa
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