Sphingobacterium sp. CZ-2: E3D81_13605
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Entry
E3D81_13605 CDS
T06166
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sphz
Sphingobacterium sp. CZ-2
Pathway
sphz03420
Nucleotide excision repair
sphz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E3D81_13605
03430 Mismatch repair
E3D81_13605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphz03400
]
E3D81_13605
Enzymes [BR:
sphz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E3D81_13605
DNA repair and recombination proteins [BR:
sphz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E3D81_13605
MMR (mismatch excision repair)
Other MMR factors
E3D81_13605
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_16
SLFN-g3_helicase
Zeta_toxin
RuvB_N
nSTAND3
PhoH
AAA_30
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QBR13146
UniProt:
A0A4P7DTM2
LinkDB
All DBs
Position
complement(3089845..3091533)
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AA seq
562 aa
AA seq
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MKICERRQDMLDYPGHILVEGGPGAGKTTLALLKAQVISRSGLLKMHQKVLFLSFARATI
SRIEEQAHDIITKDDKHHLEINTYHGFTWSLIQSYGYLLRTHRFFRLITPPNFSASIAGI
NNDAEVQKYKYDLLNNNGIICFDLFGELVSELLSRSDKICRQLSSKYPYIIVDEFQDTDT
HEWEIIKQLGKYSKIIALADLNQRIFEFRGASVTRVPEFVSHFGGHRLDLGLENNRSTGL
DIVQFGDDILTGMNRGKKYKNVKVITYNFYRSDPKLPLLNALKQAFNRKKTIGKGGDWSL
AILVKRKSDTLKVSSYLTSHRLSHEVIIDPEGPSLSAGIIAKVLEPNPRKDHAGLINLLC
QHIKGRKGTKVSIQDIQQAQFLEGYKPEKKVVGSKRKLLIAEIMNIIDQRSKVSLSGVPE
KDWISVRNLFRDSKHEVLKNVFEDSRFLRLLNKGAVLSEGLSDQWRNYQAYPEASKLVDA
ALTQEHFAMTNRTLKGIFVMNLHKSKGKEFDEVIIWEELYNPIVNPDVKRIEQDKLVLRV
AVTRAKSMATFLTPKMQPCVLL
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatatgcgaacgcaggcaagatatgttagattatccgggacatatccttgtcgag
ggtggtcccggcgctggaaaaactactttggctcttcttaaagcccaagtgatttcgcgt
agcggattgctgaaaatgcatcagaaggtgctttttctaagttttgcccgggcaacaata
tcgagaatagaggagcaggcacatgatattattacaaaggatgacaagcatcatttggag
attaacacatatcacggttttacctggtcattaattcaatcctatggatatttactacgg
acacatcgattctttcgattaattactcctccaaatttttctgcaagcattgcaggtata
aataacgatgccgaagtacaaaagtataagtatgaccttttaaataacaatggaatcata
tgttttgatctttttggcgaactagtatcagaattgctttcccgttctgataaaatttgc
agacaactatccagcaaatatccatatattatagtggatgaatttcaagatactgataca
catgaatgggagatcataaagcaactggggaagtattccaagataatcgcgttagcagac
ctgaatcagagaattttcgagttccgcggtgcttcagtaacccgcgttccagaattcgtc
agtcactttggtggtcataggttagacttgggactagaaaataatcgcagtacaggatta
gatattgtgcaatttggcgacgatattttaacaggcatgaataggggcaaaaaatataaa
aatgtaaaggtgattacatataatttttataggtcagacccaaagctacccttattaaat
gctttaaaacaagcatttaacagaaagaagaccattggtaaaggtggcgattggtcatta
gctatattggttaaaaggaaaagtgatacccttaaagtgtcctcctatcttacttcacat
cgattatcgcatgaagttataattgatccagaagggccatcattgtctgcaggtattatc
gctaaggttttagaaccgaatcctaggaaagatcatgctgggttaatcaatttattgtgc
caacacattaaagggagaaaaggtacgaaagttagtatacaggatatacagcaggcgcag
tttcttgaaggttataagccggagaaaaaagttgtgggcagtaaaagaaaattgcttatc
gcagaaataatgaacattatagatcaacggagcaaagtatctctgtcgggcgttccggag
aaagattggatctctgtgagaaacctttttagagattcaaaacatgaggttttaaagaat
gtatttgaggattcccgatttttaagattgttgaataagggagctgtactttcggaaggg
ctatcagatcaatggcggaactatcaagcatatccagaggcatcaaaacttgtggatgca
gctttaacgcaggagcactttgctatgactaatagaacgttgaaaggaatattcgttatg
aaccttcataaatctaagggaaaggaatttgatgaagtgatcatatgggaagagctatac
aatcctatagtgaatccagacgttaaaaggattgagcaagataaacttgtgcttagagtt
gcggttacacgagcgaaatcaatggctacatttttgacacccaaaatgcaaccctgcgtt
ttattatga
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