Sphingobacterium sp. CZ-2: E3D81_16965
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Entry
E3D81_16965 CDS
T06166
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sphz
Sphingobacterium sp. CZ-2
Brite
KEGG Orthology (KO) [BR:
sphz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sphz03009
]
E3D81_16965 (rimO)
Enzymes [BR:
sphz01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
E3D81_16965 (rimO)
Ribosome biogenesis [BR:
sphz03009
]
Prokaryotic type
ribosomal protein modification factors
E3D81_16965 (rimO)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
CLP1_P
TPK_catalytic
Motif
Other DBs
NCBI-ProteinID:
QBR13779
LinkDB
All DBs
Position
complement(3894475..3895809)
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AA seq
444 aa
AA seq
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MKTKKAQISSAIQKPRVNVVTLGCSKNIHDSEVLMGQLKGNQLEVVHEASNIQSSDIVVI
NTCGFIDNAKQESIDTILQFSELKDQGKVNKVIVTGCLSERYKPELQSEIPNVDAFFGTN
DLPELLSSIGADYRHELLGERLLTTPSHYSYFKIAEGCNRPCSFCAIPLMRGKHVSKSID
DLVKEAKFLASNGTKELILIAQDLTYYGLDIYGKRNLSDLMRHLSDVDGIEWIRLQYAYP
SGFPMDILDAMNERSNICNYLDMPLQHISDHMLTSMRRGTNKQKQIDLVNKIRDKVPDIA
LRTTLICGYPGETEDDFQEMLEWVEDTRFDRLGCFTYSHEEKTHAYSLEDDVPEEVKQER
VDQIMEVQQEISYDINQTKVGKEFKVLVDRVDGDFFIGRTEYDSPEVDNEVVLDAKTNYA
RIGDFVQVKVDRAEDFDLYGSIVR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaaagaaagcacaaatcagttcagcgatccaaaaaccacgcgtcaatgtggtt
actttgggctgttccaagaatatacacgatagtgaagtattgatgggtcaattgaagggc
aaccaattagaggttgttcacgaggccagcaacatccaatcttcggatatcgtggtcatc
aatacctgtggatttatcgataacgccaaacaggaatccatcgatacgattctacaattc
tccgaattgaaagatcaggggaaagtgaacaaggtgattgtaacaggctgtttatccgaa
cgctataagccagagctgcaatcggagattccaaacgtggatgcctttttcgggaccaat
gatcttccggaattattgtccagtatcggagcggattaccgccacgaattattgggagaa
agattattgaccacgccttcccactattcttatttcaagatcgcagaagggtgtaacagg
ccttgttctttctgtgccattcctttaatgcgcggaaagcatgtgtccaaatccatcgac
gacctggtaaaggaagctaaatttttagcctccaatggtaccaaagaattgatcctgatt
gctcaggatcttacctattatgggttggatatttatggtaagcgtaatctttcggacctg
atgcgtcatttatcggatgtggatggaatcgaatggatccgcttacaatatgcttatcct
tctggattccccatggatatcctggatgcaatgaacgagcgttccaacatctgtaactac
ctggatatgcctttacagcatatctccgatcatatgttgacctccatgcgccgcggtacc
aataagcaaaaacagatcgacctggtgaacaaaatcagggataaggtgcctgatattgcg
ttgagaacaaccttgatctgtggttatccaggcgaaacagaagatgattttcaagagatg
ttggaatgggtagaagatacccgtttcgatcgtttaggatgttttacctattcccacgaa
gaaaaaacccatgcttattccttggaggacgatgttcctgaggaggtaaaacaagagcgt
gtagaccagatcatggaggtgcagcaggaaatttcctacgacatcaaccagacgaaagtc
ggcaaggaatttaaggtcctggtggaccgtgtggatggtgatttctttatcggccgtacc
gagtacgattctccggaagtggacaacgaagtggtattggatgcaaaaacaaattatgct
cgaataggagattttgtgcaagtgaaggtggatcgggctgaggacttcgacctctacgga
tctattgtcagataa
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