Spirosoma aureum: G8759_18870
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Entry
G8759_18870 CDS
T06520
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
spib
Spirosoma aureum
Brite
KEGG Orthology (KO) [BR:
spib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spib03009
]
G8759_18870 (rlmD)
Enzymes [BR:
spib01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
G8759_18870 (rlmD)
Ribosome biogenesis [BR:
spib03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
G8759_18870 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
Methyltransf_25
MTS
TRAM
Cons_hypoth95
Methyltransf_11
PCMT
PrmA
TRM5-TYW2_MTfase
Motif
Other DBs
NCBI-ProteinID:
QIP14526
UniProt:
A0A6G9AQA9
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All DBs
Position
4783674..4785131
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AA seq
485 aa
AA seq
DB search
MRRRSHKAPERLYAVLVDAVAAEGKCIVRTEEGVIFVENPTGGPGVAPGDVVDLRITNKK
KQYREAVAERIHEFSAVRTQPFCEHFGTCGGCKWQHIRYDEQLRFKHQQVVDHLTRIGKV
QLPDIRPIMAAEPTQYYRNKLEFTCAEGRWITQAELGTSQPVDPRAIGFHVPGRFDKVLP
INHCYLQPDPSNAIRLAVADYVNRHDLTLYNLKVHTGFLRTLIIRTASSGQLMVTVQVAQ
DEPEILNGLLTFLQTTFPQITSLNYIINTKKNDSYQDQEVINWGGKPYIEELMDAGSGLG
GEPQPLTFRVGPKSFYQTNAQQAFNLYKVARDWAGLTGRERVYDLYTGTGTIALFVARQA
QHVIGVEYVEASVVDARVNADVNGITNTTFVAGDMRDILTDGFFDQHGRPEVVITDPPRA
GMDEAVTRQLLKAAPERIVYVSCNTATQARDLGILDEGYRVADVQPVDMFPHTHHVENVA
LLVKR
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagaaggagtcataaagcccccgaacggttgtacgcggttttggtcgatgccgtt
gcagccgagggcaaatgtattgtacgtaccgaagagggcgtaattttcgtagaaaatcca
acgggcgggccaggcgtagctcccggcgacgtggttgacctccgaatcacgaacaaaaaa
aagcaatacagggaagctgttgctgagcgtatacacgaattttcggcggtcagaacgcaa
cctttttgtgaacattttggtacgtgtggcgggtgtaaatggcagcatattcgatacgat
gaacaattgcggttcaaacaccagcaggttgtcgatcatttgacacgaattggtaaagtg
caattgcccgacattcgcccgataatggcggctgaaccgactcaatattaccgcaataaa
cttgaatttacgtgcgccgaaggccgatggataacacaggccgaactgggtaccagccag
cctgtcgaccccagagcaattgggtttcatgtgccgggtaggttcgataaagtactgccg
atcaatcactgttatctgcaacccgatccgtcgaatgccatccggctggcagttgccgac
tatgtgaaccggcatgatttaactttatataacctgaaagtacatacgggctttcttcgg
actcttatcattagaacagcttcctccggtcagctcatggtgacggtgcaggttgcacag
gatgagccggaaatactgaacggattgctgacattcctgcaaactactttcccgcagatc
acgtcgttgaactacatcatcaacaccaagaaaaacgatagctatcaggaccaggaggtc
attaattggggtggtaaaccctatattgaagagttaatggatgcgggtagtggtcttggc
ggagagccgcaaccattgacctttcgggttggacccaaatcgttttaccagaccaatgcg
caacaagcgtttaatctctataaagttgcccgcgactgggcggggctgacggggcgcgaa
cgggtttatgatctatataccggtacgggaacaatcgccttgttcgttgcccgacaggcg
cagcatgtgatcggtgtcgaatacgtcgaagcctccgtagttgatgcccgtgtcaacgcc
gacgtaaatgggatcaccaacacgacgtttgttgcaggtgatatgcgtgacattttgacg
gatggtttctttgatcagcatggtcgtccggaagtagtgatcactgatccaccccgagcg
ggcatggatgaagctgttacccgtcaactgctaaaagcggctcctgagcgtattgtatat
gtcagttgtaatacggcaacccaagcgcgtgatcttggaattctggacgaagggtatcgg
gttgccgatgtgcagccagtcgatatgtttccgcatacccaccacgtagaaaatgtagct
ctattggtgaaacgataa
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