Staphylococcus piscifermentans: SAMEA4384060_0343
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Entry
SAMEA4384060_0343 CDS
T06938
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase 2
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAMEA4384060_0343 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spic03400
]
SAMEA4384060_0343 (alkA)
Enzymes [BR:
spic01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
SAMEA4384060_0343 (alkA)
DNA repair and recombination proteins [BR:
spic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SAMEA4384060_0343 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
SNU97512
LinkDB
All DBs
Position
1:complement(387685..388704)
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AA seq
339 aa
AA seq
DB search
MQFKQLFIRTFKENLNTNTWTTAPVDTSWYQQSLHFNLYYQPPYIWSAIIDYLGKRAIPG
VETVQDHHYARTVLLRPPFSHRTVKGWLRVKENLESNALTVEMSASLIPEWREVVQRLRH
LFDLDVNPEIITTTLNEQWVTQGLRVPGAFNGFELGVRAILGQQITVKAATTLSGRLVRA
LGTPFDTGIEDLDTLFPIPESFVQLMHSEIPISDILGPLGITGRRSNTIAALAEALIEGQ
IHLNPLVKGVGADLSSASHIAQMQAAEAEMRQLLAIKGIGDWTAQYIGMRALGYTDSFLE
TDIGIKNAMPNYDTPKARLTASEAWRPLRSYAVVNLWNM
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaaacagttatttatccgtacctttaaagaaaacttaaacacaaatacttgg
accactgcacccgtcgataccagttggtaccagcaatccttgcacttcaacttatactac
caaccaccctacatctggtctgctataatagattacttaggcaagcgggctattccaggc
gtagaaaccgtccaagatcaccattacgcacgtaccgtcttgctgcgtcctcccttttca
catagaactgtaaagggctggcttcgggtaaaagaaaacttggagagcaacgcactcacg
gtagagatgagtgcaagtttaatacctgaatggcgtgaagttgtccagagattacggcat
ttatttgatttagacgttaatccagaaattatcactacaactttaaatgagcagtgggtt
actcaagggttacgtgtacccggcgcctttaatggatttgaattaggagtacgtgcaatc
ttaggtcaacagattaccgttaaagcagccactaccctttctggccgtttagtacgtgca
ttaggtacaccctttgacacgggaatcgaagacttagatacattgtttcctattcctgaa
tcattcgtgcaattaatgcatagcgagattcctatttcagatatattaggtcccttaggc
attaccggacggcgttccaatactatagctgctttagctgaggctcttattgaagggcaa
attcacttgaatcctttagtaaaaggcgttggagctgacctttcttcagcttctcacatc
gctcagatgcaagctgctgaagctgagatgcgacaactcttagcaatcaaaggcataggt
gactggacggcacaatatatcggcatgcgtgcactgggttacaccgacagttttctagaa
actgatatcggtattaaaaatgcaatgccgaactacgacacacctaaagcacgattaacc
gcctctgaagcttggcgtcctttacgcagttatgcagtcgttaatttatggaatatgtaa
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