Staphylococcus piscifermentans: SAMEA4384060_0821
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Entry
SAMEA4384060_0821 CDS
T06938
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA4384060_0821 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spic03021
]
SAMEA4384060_0821 (rpoA)
03400 DNA repair and recombination proteins [BR:
spic03400
]
SAMEA4384060_0821 (rpoA)
Enzymes [BR:
spic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA4384060_0821 (rpoA)
Transcription machinery [BR:
spic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA4384060_0821 (rpoA)
DNA repair and recombination proteins [BR:
spic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA4384060_0821 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF961
HHH_5
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
SNV00385
LinkDB
All DBs
Position
1:905226..906170
Genome browser
AA seq
314 aa
AA seq
DB search
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEG
VLHEFSAIDNVVEDVSTIIMNIKKLALKIYSEEDKTLEIDVKDEGEVTAADITHDSDVEI
LNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTV
ENTRVGQSSDFDKLTLDVWTDGSITPQESVSLAAKILTEHLNIFVGLTDEAKNAEIMIEK
EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINTVQELADKSEADMMKVRNLGRKSLEEVK
YKLEDLGLGLRKED
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaattgaaaaacctagaattgagacaattgaaattagtgaagatgctaaattc
ggtaagtttgttgttgaaccactagaacgtggctatggcactacgctaggaaactcctta
cgtcgtatcctactatcttcattgccaggtgcagctgttaagtacatcgagattgaaggc
gtacttcatgaattctcagcaattgataacgtagtagaagacgtatctacaatcattatg
aatattaagaaacttgctcttaaaatttattctgaagaagataaaacgttagaaatcgat
gttaaagatgaaggcgaagttacagcagcagacattactcacgacagtgatgttgaaatt
ttaaatccagagcttaaaattgcgactgtatctaaaggtggacatttgaaaatccgtctt
gttgctaataagggtagaggttacgcattagctgaacaaaataatacgagtgatttacca
attggtgttattccagttgattcattatactctccagtagaaagagtcaactatacagtt
gaaaatactcgtgtaggtcaaagcagtgactttgataaattaacattagatgtatggact
gatggatctatcactccacaagaatcagtttctttagcagcaaaaattttaactgagcac
ttgaacatctttgttggactcactgatgaagcgaaaaacgctgaaatcatgattgaaaaa
gaagaagaccaaaaagaaaaagtacttgaaatgtctatcgaagaattagacttatcagta
cgttcttataactgtttaaaacgtgcaggaatcaatactgttcaagaattggctgacaaa
tctgaagcagatatgatgaaagtacgtaatttaggtcgtaaatctttagaagaagtaaaa
tacaaactcgaagacttaggtttaggtctaagaaaagaagattga
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