Staphylococcus piscifermentans: SAMEA4384060_0914
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Entry
SAMEA4384060_0914 CDS
T06938
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
spic
Staphylococcus piscifermentans
Pathway
spic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4384060_0914 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spic03021
]
SAMEA4384060_0914 (rho)
03019 Messenger RNA biogenesis [BR:
spic03019
]
SAMEA4384060_0914 (rho)
Transcription machinery [BR:
spic03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SAMEA4384060_0914 (rho)
Messenger RNA biogenesis [BR:
spic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SAMEA4384060_0914 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
Mor
ATPase_2
S1CSD-TOTE-2
AAA
AAA_24
AAA_25
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
SNV00865
LinkDB
All DBs
Position
1:996460..997776
Genome browser
AA seq
438 aa
AA seq
DB search
MTERVRTSPQYESFHELYKNNTTKVLTEKAKALKLTNYSKLNKKELVLAIMEAQMEKDGN
YYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKLGDKVTGKVRKPKDNEK
YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPEERIKLETVPTNYSTRIMDLVVPIGLGQ
RGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVGERPEEVTDIERSSEDAEVVHST
FDEPPQHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
ASLYKPKNFFGAARNIEAGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRKLSE
RRIFPAIDIARSSTRKEELLVDQKELDSLWQLRNMFRDTTDFTERFIRKLKRSKTNKEFF
EQLQAAAVESQKTGKPII
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaagagtgcgtacatctcctcaatatgagtcctttcatgagctgtacaagaac
aatacaacaaaagttctcactgagaaagctaaagcattaaaactaactaattacagcaaa
ctcaataagaaagaattagtacttgccattatggaagcacagatggaaaaagatgggaat
tactacatggaaggcatcttagatgatatccagccggatggatatggctttttacgaacg
gtcaactattcaaaaggtgaaaaagatatttatatctctgccagccaaattcgtcgtttc
gaaattaaactcggcgacaaagtaactggtaaagtaagaaaaccaaaagataatgaaaaa
tactatggtttgctccaagttgatttcgtcaacgatcataacgcagaggaagtaaagaaa
agaccccacttccaagctttaactccactttatcccgaagaaagaatcaaattagaaaca
gtacccactaactattcgactagaattatggatttagttgtgcctatcggtttaggacaa
cgtggattaattgtagcaccacctaaagcaggaaagacttctttattaaaagaaatagcc
aatgcaatatcaacaaacaaacctgatgctaaattatttatcctcttagtgggtgaaaga
cctgaagaggtaacagatatagaacgctcaagcgaagacgctgaggttgtacactctaca
tttgacgaaccgcctcaacaccatgtgaaagttgcagagttactgttagaacgtgcgaaa
cgccttgttgaaatcggtgaggatgttatcattttgatggattccattacacgacttgcg
cgtgcatataacttagtcattccaccaagtggccgtactttatcaggtggtttagatcct
gcttctttatataaacctaagaatttcttcggtgcagccagaaatattgaagctggtggt
agtttgaccatcttagctactgccttagtagacacaggttctcgtatggatgatgttatc
tatgaagaattcaaaggaacaggtaatatggaattacatctggatcgcaaactttcagaa
cgtcgtattttcccagctattgatatcgcgagaagttcaacacgtaaagaagaattgtta
gtggatcaaaaagaactagacagcttatggcaactgcgtaatatgttccgcgatacgaca
gattttacagaacgctttattcgcaagctgaaaagatctaaaacgaacaaagaatttttt
gaacaacttcaagctgctgcagttgaaagtcaaaagacaggcaaaccgataatctaa
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