Staphylococcus piscifermentans: SAMEA4384060_1267
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Entry
SAMEA4384060_1267 CDS
T06938
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic03030
DNA replication
spic03410
Base excision repair
spic03420
Nucleotide excision repair
spic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4384060_1267 (polA)
03410 Base excision repair
SAMEA4384060_1267 (polA)
03420 Nucleotide excision repair
SAMEA4384060_1267 (polA)
03440 Homologous recombination
SAMEA4384060_1267 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spic03032
]
SAMEA4384060_1267 (polA)
03400 DNA repair and recombination proteins [BR:
spic03400
]
SAMEA4384060_1267 (polA)
Enzymes [BR:
spic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA4384060_1267 (polA)
DNA replication proteins [BR:
spic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMEA4384060_1267 (polA)
DNA repair and recombination proteins [BR:
spic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SAMEA4384060_1267 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4384060_1267 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
HHH_2
WHD_BrxR
DUF1949
Motif
Other DBs
NCBI-ProteinID:
SNV03347
LinkDB
All DBs
Position
1:1326617..1329247
Genome browser
AA seq
876 aa
AA seq
DB search
MEKLVLIDGNSLSFRAFYALPLLTNRAGIHTNAIYGFAMLLEKIKKEEKPTHFLVAFDAG
KTTFRHQTFSDYKGGRQKTPPELSEQFPLIRQLLDAYQIKHYELENYEADDIIGTLSKQA
DKAGIKTIIVTGDRDLTQLASENVTIYYTKKGVTDVDHYTPEFIAEKYNGLQPSQIIDMK
GLMGDTSDNIPGIAGVGEKTAIKLLNQYDSVENLYQHIDEVSGKKLKEKLENGHDDALMS
KQLATIKRDSPIEVTLKDTKLPEEVDQTAKIDLFKELDFKQMLNQIDVDAEDKTEEKREY
EVEHDFNNINFNDLSEAAVHFEVDEGDYLTADILKFGMKADGHFVVIDADTIQDYPELVK
WLEDKNTRKLVYDAKKTYAEAHRLNINIQNITFDIMLASYILDPSRSIDDVYSVVQHYGQ
NYVAEAVNIYGKGRKRQIPDDEVMNPYIAAILDAVSESTPLMYDQLEEYNQLELFKSLEL
PLARILGEMEELGIYTDVDELQEMEKEIQGKLDTLIERIHEAAGEEFNINSPKQLGVVLF
EKLELPVIKKTKTGYSTAVDVLEQLQGEHPIIDDILEYRQLSKLQSTYIEGLQKVIQKDH
RIHTHFNQTLAQTGRLSSVDPNLQNIPVRLEEGRRIRKAFKPAEPGNVILSADYSQIELR
VLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDGLMRRQAKAVNFGIVYGISDYG
LSQSLGISRKAAKQFIDDYLASFPGVKQYMSDIVKDAKAKGYVETLLHRRRYIPDITSRN
FNRRSFAERTAMNTPIQGSAADIIKLAMVNFDKEIQNQDFHVHLLLQVHDELIFELPEAE
VEAFSKFIEDIMDNAIDLDVPLQVDTNYGPTWYDAK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaagttagtattaattgatggaaatagtttaagtttccgcgcattttatgcttta
cctcttttgacaaatcgtgcgggtatccatacaaatgctatttatggtttcgcgatgtta
ttagaaaaaattaaaaaagaagagaagcctacacactttttagtggcatttgatgcaggc
aaaaccaccttcagacatcaaactttcagtgattataaaggcggacgtcaaaagacaccg
ccagaattaagcgagcagtttcctttaattcgccaattattagatgcgtatcaaattaag
cattatgaactagaaaattatgaagcagatgatattattgggactttgagtaaacaagcg
gataaagcaggtatcaaaacgattatcgttacaggagatcgcgacttgacgcaattagct
tctgaaaacgtaacaatttattatacgaaaaaaggcgtaacagatgtggaccattataca
cctgaatttattgctgaaaagtataacggtctacagccttcacagataatagatatgaaa
ggcttaatgggtgatacttctgacaatatccctggcattgctggtgttggagaaaaaaca
gcaatcaaattactgaatcaatatgactctgtagaaaatctctatcagcatatagatgaa
gtttcaggtaaaaaattaaaagaaaaactcgaaaatggtcatgacgatgctttaatgagc
aaacagttagcgactatcaaacgagacagtccgattgaagtcactttaaaagacacaaaa
cttcctgaagaagtggaccaaacagcgaaaattgatttatttaaagaattagatttcaaa
caaatgttgaatcaaatcgatgtagatgcagaagataaaacagaagaaaaacgtgaatat
gaagttgaacacgacttcaataatattaattttaatgacttatctgaagcagcagtgcat
ttcgaagtggatgaaggagactatttaacggccgatatccttaaattcggaatgaaggct
gatggtcactttgttgtgatcgatgccgatactattcaagattaccctgaattggtcaaa
tggttggaagataaaaacacgcgaaaacttgtttatgacgctaagaaaacatatgctgaa
gcgcatcgattaaatataaatattcaaaatattacttttgatattatgttagcaagttat
atcttagatccatctagaagtattgatgatgtctattcagttgttcagcattatggtcag
aattatgtggctgaagcggtcaacatttatggtaaaggtcggaaacgtcaaatacctgat
gacgaagtgatgaatccttatattgcagcaatcttagatgctgtctctgaaagtactccg
cttatgtatgaccagctggaagaatacaatcaacttgaactctttaaatcactagaactt
ccactcgcacgtattttaggagaaatggaagaactagggatttatacggatgttgacgaa
ctgcaagaaatggaaaaagaaattcaaggaaagctggatactcttattgagcgcattcat
gaggcggctggggaagaatttaatatcaattcaccaaaacaactgggagtagtactattt
gaaaaacttgaattaccagtaatcaagaaaactaaaacaggatactctaccgcagtagat
gtgcttgagcaattacaaggagaacatcctattatagatgatatacttgaatatcgtcag
ctctctaaattacagtccacttatatagaaggactgcaaaaggtgatacaaaaagaccac
cgcatacacacacacttcaatcaaactttggcacagactgggcgcttatcttctgtagat
ccgaacttacaaaatattccggttcgcttagaagaaggaagaagaataagaaaagcattc
aagcctgcagaaccaggcaatgtaattctctcagcagactattcacaaatcgaattacgg
gtgctagctcacattacacaagatgagagtatgattaaagcttttagagaaggacatgat
attcatacggccactgccatgaaagtatttggtgtagaacctgatgaagtagacggatta
atgcgtcgccaagctaaagcagttaacttcggcattgtttatggtattagtgattacggc
ttaagccagagtctgggtatttctagaaaagctgcgaaacaatttatcgatgattattta
gctagtttcccaggggtcaaacaatacatgagtgatattgttaaagatgcgaaagcgaaa
gggtatgtagaaacactcttacatcgtcggagatatattcccgatattacgagtcgtaat
tttaaccgcagaagttttgcagaaagaactgcaatgaatacaccgatacaaggtagtgct
gcggatattatcaaattagcaatggtcaattttgataaggaaattcagaatcaagatttt
catgtgcatttacttttacaagtgcacgacgaattgatttttgaacttccagaagcagaa
gttgaagcattcagtaagtttattgaagatattatggataatgcaatagatttagatgta
ccattacaagtggatacgaactacggtccaacttggtatgatgcaaaatag
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