Staphylococcus piscifermentans: SAMEA4384060_1358
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Entry
SAMEA4384060_1358 CDS
T06938
Symbol
ribD_2
Name
(GenBank) putative deaminase
KO
K01493
dCMP deaminase [EC:
3.5.4.12
]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic00240
Pyrimidine metabolism
spic01100
Metabolic pathways
spic01232
Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
SAMEA4384060_1358 (ribD_2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
spic02044
]
SAMEA4384060_1358 (ribD_2)
Enzymes [BR:
spic01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.4 In cyclic amidines
3.5.4.12 dCMP deaminase
SAMEA4384060_1358 (ribD_2)
Secretion system [BR:
spic02044
]
Type II secretion system
Competence-related DNA transformation transporter (DNA-T) core components
SAMEA4384060_1358 (ribD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dCMP_cyt_deam_1
MafB19-deam
Bd3614-deam
APOBEC2
SNAD4
APOBEC_N
NAD2
APOBEC4_like
NAD1
OTT_1508_deam
APOBEC3
Motif
Other DBs
NCBI-ProteinID:
SNV03691
LinkDB
All DBs
Position
1:1410484..1410945
Genome browser
AA seq
153 aa
AA seq
DB search
MDRIKWEEYFMAQSHLLSLRSTCTRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLM
EDNHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAQDYH
NHEYAIQLLEQSGIEYKKIPFDARQVAEYLTKK
NT seq
462 nt
NT seq
+upstream
nt +downstream
nt
atggacagaattaaatgggaagaatacttcatggctcaaagtcacctattatccttaaga
tcaacatgcacgaggttatctgtaggcgcaactatagttaaagataaccgtattatagca
ggaggctacaatggctctgtagctggcgaagtacattgtatagatgaaggatgtttgatg
gaagataaccactgcatcagaactatacacgctgaaatgaacgctttattgcaatgtgct
aagcaaggtgtatcgacagaaggagccacgatatacgttactcactttccatgcctaaac
tgtactaaatcaattatacaagcaggcatcaagagaatttactatgcacaagactatcac
aatcatgaatatgcaatccaactgctggaacaatctggaattgaatataaaaagatacca
ttcgatgcgagacaggtagcagaatatttaacaaagaagtga
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