Staphylococcus piscifermentans: SAMEA4384060_1390
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Entry
SAMEA4384060_1390 CDS
T06938
Symbol
cshB
Name
(GenBank) putative helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
spic
Staphylococcus piscifermentans
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spic03019
]
SAMEA4384060_1390 (cshB)
03009 Ribosome biogenesis [BR:
spic03009
]
SAMEA4384060_1390 (cshB)
Enzymes [BR:
spic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SAMEA4384060_1390 (cshB)
Messenger RNA biogenesis [BR:
spic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMEA4384060_1390 (cshB)
Ribosome biogenesis [BR:
spic03009
]
Prokaryotic type
rRNA helicases
SAMEA4384060_1390 (cshB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
ApbA
Motif
Other DBs
NCBI-ProteinID:
SNV03837
LinkDB
All DBs
Position
1:1442577..1443917
Genome browser
AA seq
446 aa
AA seq
DB search
MAKQHPFEQFDLDDQLIEAVSDLNFNQPTEIQQRVIPKILKGTSIIGQSQTGTGKSHAFL
LPLMQSIDPSIQEPQAIVVAPTRELAQQLNNAAQHLAEFKKDVKVSLFIGGTDFERDKQR
CNIQPQLVIGTPTRINDLSKDGTLHTHLANYLVVDEADLMIDLGLIEDVDHIAARLEDNA
NIAVFSATIPKSLHPFLNKYLNQPELIEVDNKTQNKKNIDFYLIPTKGAAKVDKTKSLIK
ILNPYLCIIFCNSRENADELAEELTADGLKIGMIHGGLSPRERKQQMKRIRNLDFQYVIA
SDLASRGIDIEGVSHVINFDVPKDIDFFTHRVGRTGRGQYKGEAFTLFTPDEEELINDIE
EKGYHFEDVDIKNGEIVPIKAHNTRKTRQNKDDHLTTQVKRKIKRGNKKKVKPGYKKKFK
KELENLKRQERKQYSKRKNKEQRKNR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacaacatccatttgaacaatttgatttagatgatcagcttatagaagcagtc
tctgatttaaattttaatcagccaactgaaatccaacaaagagttattcccaaaatttta
aaagggacaagtattatcggacaatctcaaaccggtacaggtaaatcacatgcatttctt
ttaccattaatgcaaagtattgatccatctatccaagaacctcaagcgattgtagttgca
ccaacaagagaattggctcaacagcttaataacgcggcacagcatttagccgaatttaaa
aaggatgtcaaagtttctttgtttatcggcggtactgactttgaaagagataaacagcgt
tgcaatatacaaccgcaacttgtaattggcacaccgactagaattaacgatttatctaaa
gatggtactttgcatacacatttagcaaactacttagttgttgatgaagctgacttaatg
attgatttaggattaatcgaagatgtggaccatattgctgctcgattagaagacaatgcg
aatatcgcagtattcagtgcaacgatacctaaatcattacatccgtttttaaataaatac
ttgaatcaaccagaattaattgaagtcgataataagacgcaaaataagaaaaatattgac
ttttacctaataccaacaaaaggtgcggcgaaagttgataaaactaagtccttaataaaa
atattaaatccttatttatgtattattttttgcaacagcagagaaaatgcagatgagcta
gcagaagaacttacagccgatggattgaaaatcggtatgattcatggtggattatccccg
cgtgaacgtaagcagcaaatgaaacgtattagaaatttagatttccaatatgtaattgca
agtgatttagcgtcaagaggtatcgatattgaaggagtgagtcatgtcattaattttgat
gtgcctaaagatattgatttctttacccaccgtgtaggacgaactggtagaggtcaatac
aaaggggaagctttcacgttgttcacgccagatgaagaagaactgataaatgacatcgaa
gaaaaaggctatcattttgaagatgtagatattaaaaatggcgaaatcgtacctatcaaa
gcacataacactcgaaaaacgcgtcaaaacaaagatgatcatttaacaactcaagttaag
cgtaaaattaaacgtggcaacaagaaaaaagttaaaccaggttacaagaaaaagtttaaa
aaagaattagaaaatttaaaacgtcaagagcgtaagcaatacagcaaacgcaaaaataaa
gaacaacgtaaaaatagataa
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