Staphylococcus piscifermentans: SAMEA4384060_1660
Help
Entry
SAMEA4384060_1660 CDS
T06938
Name
(GenBank) putative metallo-beta-lactamase superfamily hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4384060_1660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spic03019
]
SAMEA4384060_1660
Messenger RNA biogenesis [BR:
spic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAMEA4384060_1660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
vATP-synt_E
Ribosomal_L24e
DUF2686
Imm49
Motif
Other DBs
NCBI-ProteinID:
SNV05271
LinkDB
All DBs
Position
1:complement(1719005..1720678)
Genome browser
AA seq
557 aa
AA seq
DB search
MNLVKKKNNDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGVDVVIPDIQ
YVIENKDKLKGIFLTHGHEHAIGAVSYVLEQVDAPVYGSKLTLALVKENMKERNINKKVR
YYTVNDESVMRFKNVNVSFFNTTHSIPDSLGVIIHTSYGAIVYTGEFKFDQSLHGNYAPD
LKKMTEIGEEGVFALISDSTEAEKPGYNTPENVIESHMLDAFTKVNGRLIVSCYASNFIR
IQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFNIPKDLLIPINEVENYPKNEVVIIA
TGMQGEPVEALNQMARQKHKIMNIEPGDSVFLAITASANMEVIIGDTLNELARAGAEIIP
NSKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGVAPEKIFLAEK
GDVLNFDGKDMVLNEKVESGNVLIDGIGVGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNR
RIAAGPEIQSRGFVYVRESEELLKEAEEKVREIVEQGLQERRIEWSEIKQNMRDKISKLL
FENTKRRPMIIPIISEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttagtaaagaaaaagaataatgatattcgcatcatcccgcttggcggcgtgggt
gaaattgcgaaaaatatgtatatcgtcgaagtagacgatgaaatgtttatgctggatgca
ggattgatgttcccagaagatgaaatgctgggcgtcgatgttgtcattccagatattcag
tatgtcattgaaaacaaagataaactaaaaggaattttccttacacatggtcatgaacat
gcgataggtgcagtaagttatgtacttgaacaagtcgatgcgcccgtgtatggctcgaaa
ttaacacttgcattagtaaaagaaaatatgaaagaacgtaatattaataaaaaagtacgt
tattatacagtgaatgatgaatctgttatgcgtttcaaaaacgttaacgtgtcatttttc
aacacaacacatagtattccagacagtttgggtgtaattatccatacttcttacggtgca
attgtttataccggcgaatttaaattcgatcaaagtttgcacggcaactatgcacctgac
ttgaaaaaaatgactgaaatcggcgaagaaggtgtatttgctttaatcagtgattctact
gaagctgaaaagcctggctacaatacaccagaaaatgtgattgagtcacatatgttagat
gccttcacaaaagtgaatggtcgtttaattgtatcttgctatgcatctaactttatccgt
atccaacaagtattgaatattgcaagcaaactcaatcgtaaagtatccttcttaggtcgt
tctttagaatcatcattcaatattgcacgtaaaatgggatatttcaatattcctaaagac
ttattaattccaattaatgaagttgaaaattatcctaaaaacgaagtcgttattattgcg
acaggtatgcaaggtgaacctgttgaggctttaaatcaaatggccagacaaaaacataaa
attatgaacatcgaaccaggcgactctgtatttttagcgattaccgcttctgccaacatg
gaagtaatcattggtgatacattgaatgaattagcacgtgctggtgccgaaattattcca
aatagcaagaaaatccacgcttcaagtcatggttgcatggaagagctcaaaatgatgatc
aacatcatgaagccagaatactttatccccgtccaaggcgagttcaaaatgcaaattgcc
catgctaaattagcagctgaagcgggcgtagcaccagaaaaaatcttcttagctgaaaaa
ggagatgtattgaatttcgatggtaaggacatggtgttgaatgaaaaagtagaatccgga
aatgtcttaattgacggtattggtgtcggtgatgtcggtaatatcgtattacgtgatcgc
cacttgcttgctgaagatggcatctttattgcggtagtaacacttgatccgaaaaacaga
agaatcgcagcaggtcctgaaattcaatcacgtggatttgtttatgtgcgtgaaagtgaa
gaattattgaaagaagcggaagaaaaagtccgcgaaattgttgagcaaggtttacaagaa
cgtcgtatcgaatggtctgaaatcaaacagaatatgcgcgataaaattagtaaattgttg
tttgaaaacactaagagacgtccgatgattattccaatcatttcagaagtttag
DBGET
integrated database retrieval system
