Staphylococcus piscifermentans: SAMEA4384060_1664
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Entry
SAMEA4384060_1664 CDS
T06938
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
spic
Staphylococcus piscifermentans
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spic03016
]
SAMEA4384060_1664 (truB)
Enzymes [BR:
spic01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SAMEA4384060_1664 (truB)
Transfer RNA biogenesis [BR:
spic03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SAMEA4384060_1664 (truB)
Prokaryotic type
SAMEA4384060_1664 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DUF1192
Motif
Other DBs
NCBI-ProteinID:
SNV05296
LinkDB
All DBs
Position
1:complement(1724504..1725418)
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AA seq
304 aa
AA seq
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MDGILPVFKERGLTSHDVVFKLRKILHTKKVGHTGTLDPEVDGVLPVCVGNATKVSDYIM
DMGKAYEAEVTIGFSTTTEDQTGEVLETKRVEADTLSIAEIDKAIDSFKGEIEQIPPMYS
SVKVNGRKLYEYARNNETVERPKRKVSIYDIERTSEPQFHDGICTFNLAIRCGKGTYIRT
LATDIGKELGYPAHMSRLTRVESGGFQAHDSLKLDEIETLFKQESLQERLFPIEYGLKGL
PHIQISNPEMKKRILNGQKFNKNDFEEAIEGITVFMDSDSGKALALYIPHSEKPNEIKPK
KVFN
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggatggtattttacctgtttttaaagaacgcggtcttacaagccacgatgtagtcttt
aaactacgtaaaattttacatactaaaaaagtagggcatacggggacgctagatccggaa
gtggatggtgtattacctgtatgtgtagggaatgctactaaagtaagtgattatattatg
gatatgggcaaagcatatgaagcagaggttacaatcggtttcagtacaacgactgaagac
caaactggagaagtgttagaaacaaaaagagttgaagcggacactttatcaattgcggaa
attgataaagcaatcgattcgtttaaaggtgaaattgaacaaattccgcctatgtattct
tctgtaaaagtgaatgggcgtaaattatacgaatatgcacgtaacaacgaaacagtcgaa
cgaccgaaacgtaaagtaagtatttacgacattgaacgaacatcagaaccgcaattccat
gatggcatttgcacttttaatcttgctattcgttgcggcaaaggtacttatattcgtaca
ctagcgactgatataggaaaggaattgggttatcctgcacacatgtctcgcttaacacgt
gtcgaaagcggcggcttccaagcccatgatagtttgaaattagacgaaatagaaacactt
tttaagcaagaatcattacaggaacgcttatttcctatagaatatggattaaagggatta
ccgcatattcaaatcagtaatccagaaatgaaaaaacgtatattaaatggtcagaagttt
aataaaaacgattttgaggaagcgattgaaggtatcactgtatttatggatagtgattct
ggtaaagcactcgcgctttatatcccgcattctgaaaaacccaatgaaatcaagccgaag
aaagtttttaattaa
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