Staphylococcus piscifermentans: SAMEA4384060_1672
Help
Entry
SAMEA4384060_1672 CDS
T06938
Symbol
polC_2
Name
(GenBank) DNA polymerase III PolC
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic03030
DNA replication
spic03430
Mismatch repair
spic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4384060_1672 (polC_2)
03430 Mismatch repair
SAMEA4384060_1672 (polC_2)
03440 Homologous recombination
SAMEA4384060_1672 (polC_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spic03032
]
SAMEA4384060_1672 (polC_2)
03400 DNA repair and recombination proteins [BR:
spic03400
]
SAMEA4384060_1672 (polC_2)
Enzymes [BR:
spic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA4384060_1672 (polC_2)
DNA replication proteins [BR:
spic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMEA4384060_1672 (polC_2)
DNA repair and recombination proteins [BR:
spic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMEA4384060_1672 (polC_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
HHH_3
tRNA_anti-codon
RNase_H_2
Integrin_A_Ig_2
T2SSK
CCDC50_N
Motif
Other DBs
NCBI-ProteinID:
SNV05344
LinkDB
All DBs
Position
1:complement(1731575..1735888)
Genome browser
AA seq
1437 aa
AA seq
DB search
MAMTNQEKFKVLADQIKIANQLEPEILEQSELTRIDVSSKARTWLFQITLPHFLSHEDYL
LFTHALTQEFKDIATVNWHFKVQDTLHQDEHAMKYFNHCIDQTGLSPKVKGQLKQKRLIM
SGDVLKVMVSNDVERDYFHKACNGSLVKAYRQCGFDVNKIVFETDNDGQDADLASLEAYI
QEEDQQSAKEATEKLEKMKAEKAKQQDNNESSVAKCQIGKPIQVDNVRSIESIIEEEFKV
AIEGVIFDMNIKELKSGRHIVELKVTDYTDSLVLKMFTRKNKDDLEHFKALSVGKWVRAQ
GRIEEDTFVRDLVMMMSDIEEIKKAPKQDKADDKRVELHLHTAMSQMDGINNIGDYVAQA
AKWGHPAIAVTDHNVVQAFPDAFAAAEKNDIKMLYGMEGMLVDDGVPIAYKPTDRILKDA
TYVVFDVETTGLSNQYDKIIELAAVKVHDGEIIDKFERFSNPHERLSDTIKNLTHISDDM
LVDAPEIDEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERAGLGNYTNGVIDTLELSRT
INTEFGKHGLNFLAKKYGVELTQHHRAIYDTEATAYIFIKMLKQVEELGVTNHKDINQSL
SNEDAYKRARPSHVTILVQNQEGLKNLFKIVSESLVTYYYRTPRIPRSLLDEYREGLLIG
TACDEGEVFTAVMQKDQSQVERIAKYYDYIEVQPPALYQDLIDRELIRDNKTMEEIYERL
LKAGEAVNVPIVATGNVHYLNEHDAIARKILIASQPGNPLNRSTLPEAHFRTTDEMLDAF
HFLGEEKAREIVIDNTQALADKIERVVPIKDKLYTPHMDGANEEIRELSYKNAHKLYGDD
LPQIVVDRLEKELESIIGNGFSVIYLISQRLVKKSLNDGYLVGSRGSVGSSFVATMTEIT
EVNPLPPHYICPKCKKSEFFNDGSVGSGFDLPDKKCECGAEMIKEGQDIPFETFLGFKGD
KVPDIDLNFSGEYQPEAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQGIHKR
GAEVDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPVQYPADDQSSPWMTTHFDFHS
IHDNVLKLDILGHDDPTMIRMLQDLSGIDPKTVPVDDKETMRIFSTPESLGVTEEEIMCK
TGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQDLVRSGTCDLSGV
IGCRDDIMVYLMYAGLEPSLAFKIMEAVRKGKGLQEEWEEIMKENNVPDWYLDSCKKIKY
MFPKAHAAAYVLMAVRIAYFKVHYPLYYYASYFTVRASDFDLITMIKDKEGIKSVVKDMY
SKYMELGKKEKDVLTVLEIMNEMAHRGFRMQPISLEKSQAFEFIIEGDTLIPPFVAVPGL
GENVAKRIVEAREEGPFLSKEDLNKKAGLSQKVIEYLDELGSLPGLPDKAQLSIFDM
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
ttggcaatgacaaatcaagaaaaatttaaagttctagccgatcagattaaaattgcgaat
cagttagaacctgaaatattagaacaaagtgagctaacacgtattgatgtgtcgtcaaaa
gcacgcacatggctttttcaaatcaccttgccgcatttcttatctcacgaagattattta
ttattcactcatgctttgactcaagaattcaaagatattgctacagtgaattggcatttt
aaagttcaagatacattgcaccaagatgaacatgctatgaaatatttcaatcactgtatc
gatcaaacaggcttatcacctaaagtcaaaggtcaattgaaacagaaacgtctgattatg
tcaggggacgttttgaaagtaatggtttctaatgatgtcgaacgcgattattttcacaaa
gcttgtaatggcagtttagtgaaagcctatcgccaatgcggtttcgatgtgaacaaaatc
gtctttgaaacagataatgatggtcaagatgcagacttagcatcacttgaagcttatatt
caagaagaagatcaacaaagcgctaaagaagctactgaaaaattagaaaagatgaaagct
gaaaaagcgaaacaacaagataataacgaaagctcagtcgcaaaatgtcaaatcggcaaa
ccgattcaagtggacaatgtacgttcaattgaatcgattatcgaagaagaattcaaagtg
gcaatcgaaggtgtcatcttcgatatgaatattaaagagttgaagagtggacgtcacatt
gtcgaattaaaagtcacagactatacggattcactcgtacttaaaatgttcactcgtaaa
aataaagatgacttggaacattttaaagcactaagtgtcggtaaatgggtacgagcacaa
ggacgtattgaagaagatacgtttgtacgcgacttagtcatgatgatgtcagatattgaa
gaaattaaaaaagcacctaaacaagataaagcagatgataaacgtgttgaattgcacttg
cacacagcaatgagtcaaatggacggtattaataatatcggcgattatgtagcgcaagca
gccaaatggggacatccagctattgcggtaacagatcataatgtggtacaagctttccca
gatgcttttgcggcagcggaaaaaaatgacattaaaatgttgtatggtatggaaggtatg
ttggtagatgacggtgtaccgattgcctataaaccgacagaccgtatattgaaagatgca
acatatgtcgtatttgacgtcgaaactacaggtctttcaaaccaatatgacaaaatcatc
gagttagcagctgttaaagtacatgatggtgaaattatagataaatttgaacgtttcagt
aatccgcatgaacgtttatcagatactattaagaatttgacgcatatttctgatgatatg
ttagtagatgcaccggaaattgacgaggtattgacggagtttaaagaatgggtcggcgat
gcgattttcgttgcgcataacgcatcattcgatatgggctttattgatacaggttatgaa
cgagcaggactcggcaattatacgaacggagttattgatactctagaattatctcgtacc
atcaatactgaatttggtaagcatggtttgaacttcttagcgaaaaaatacggcgtagaa
ctgacacaacatcaccgtgccatttacgatacagaagccacagcatacatttttattaaa
atgttgaaacaggtagaagaattaggtgtaacgaatcataaagatatcaaccaatcatta
tctaatgaagacgcctataaacgggcgcgcccaagtcatgtaacaattttagtgcagaac
caagaaggcttgaagaatttatttaagattgtcagtgaatctttagtcacatattattac
cgaactccacgaattccgcgttctttgttagatgagtatcgcgaagggttgttaattggt
acagcttgtgatgaaggtgaagtctttactgctgtaatgcagaaagatcagtcgcaagta
gaacgtattgcgaaatactatgactatatcgaagtacagccgccagcgttgtatcaagat
ttgattgaccgcgaattgattcgtgataataaaacgatggaagaaatttatgaaagattg
ttgaaggcgggagaagcggttaatgtgccgatcgtagccacaggcaatgtgcattatctc
aatgaacatgatgcgattgcccgtaagattttgattgcttcacaacccggtaatccgctg
aaccgttcaacattaccggaagcccatttccgtactacagacgaaatgttagatgctttt
cactttttaggtgaagaaaaagcacgtgaaatcgtcatagacaatactcaagcattagct
gataaaattgaacgcgtggttcctattaaagataaattgtatacaccacatatggatggc
gcgaacgaagaaatacgagaattaagttataagaatgcacataaactttatggcgatgat
ttaccgcaaatcgtagtagatcgtttggaaaaagaacttgaaagtatcattggtaacggg
ttctcggttatctatttgatttcgcaacgtttggttaaaaaatcattgaatgacggttac
ttagtaggttcacgtggttcagtcggttccagtttcgtagcgacaatgactgaaattacc
gaagtcaatccgcttcctcctcactacatttgtccaaaatgtaagaaaagcgaattcttt
aatgatggttcagtcggttccggctttgacttgccagataaaaaatgtgaatgcggtgct
gaaatgattaaagaaggacaagatattcctttcgaaactttcttaggatttaaaggggat
aaagttcctgatattgacttgaacttcagtggtgaatatcaacctgaagcacataactat
accaaagtattattcggtgaggataaagtattccgtgccggcacaatcggtactgtagca
gagaagacagcattcggttatgtgaaagggtatctcaacgaccaaggtattcataaacgt
ggcgcagaagttgaccgtttagtgaaaggttgtacaggcgtgaaacgtacgactgggcag
catccaggtggtattatcgtagtaccggactacatggatatttatgattttacacccgtt
caatatccagccgatgaccaatcatcaccttggatgacgacacactttgacttccactcc
atacacgataatgtattgaaactcgatattctaggacacgatgatccgacaatgatccgt
atgttgcaagatttatcaggtattgatccgaaaactgtaccagttgacgataaagaaaca
atgcgtatctttagtacaccagaatctcttggagttacggaagaagaaattatgtgtaaa
acaggcacattcggtgtaccggaatttggtactggcttcgtacgacaaatgcttgaagat
accaaaccgacgacgttctcagaacttgtacaaatttctggtctgtctcatggtacggat
gtatggttaggcaacgcccaagacttagtccgttcaggtacatgtgacttatctggtgtt
atcggttgtcgtgacgacattatggtttacttgatgtacgcaggcctcgagccatcatta
gccttcaagattatggaagctgtgcgtaaaggtaaaggactgcaagaagaatgggaagaa
attatgaaagagaataatgtgccagattggtacttggattcttgtaaaaaaatcaagtac
atgttcccgaaagcccatgcggctgcctatgtcttaatggctgtgcgtattgcatacttt
aaagtacactatccgctttattactacgcaagttactttactgtccgtgcatcagacttt
gatttaattacgatgattaaagataaagaaggcattaagagtgtcgttaaagatatgtat
tctaaatatatggaacttggtaaaaaagaaaaagatgtcttaacagtcttagaaattatg
aatgaaatggcacatcgcggtttccgcatgcagccgatcagtttagaaaaaagccaagcc
tttgaatttattattgaaggagatactctaattccaccgtttgttgcggttcctggatta
ggtgaaaacgtagcaaaacgtattgtagaagcacgtgaagaaggtccgttcttatctaaa
gaagatttgaataaaaaagccggtttatcacaaaaggttatcgaataccttgatgaatta
ggttcattgccaggccttcctgataaagcacaactatcaatttttgatatgtaa
DBGET
integrated database retrieval system
