Staphylococcus piscifermentans: SAMEA4384060_1841
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Entry
SAMEA4384060_1841 CDS
T06938
Symbol
pdhD_3
Name
(GenBank) dihydrolipoamide dehydrogenase
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic00010
Glycolysis / Gluconeogenesis
spic00020
Citrate cycle (TCA cycle)
spic00260
Glycine, serine and threonine metabolism
spic00280
Valine, leucine and isoleucine degradation
spic00310
Lysine degradation
spic00380
Tryptophan metabolism
spic00620
Pyruvate metabolism
spic00630
Glyoxylate and dicarboxylate metabolism
spic00640
Propanoate metabolism
spic00670
One carbon pool by folate
spic00785
Lipoic acid metabolism
spic01100
Metabolic pathways
spic01110
Biosynthesis of secondary metabolites
spic01120
Microbial metabolism in diverse environments
spic01200
Carbon metabolism
spic01210
2-Oxocarboxylic acid metabolism
spic01240
Biosynthesis of cofactors
Module
spic_M00009
Citrate cycle (TCA cycle, Krebs cycle)
spic_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
spic_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
spic_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
SAMEA4384060_1841 (pdhD_3)
00020 Citrate cycle (TCA cycle)
SAMEA4384060_1841 (pdhD_3)
00620 Pyruvate metabolism
SAMEA4384060_1841 (pdhD_3)
00630 Glyoxylate and dicarboxylate metabolism
SAMEA4384060_1841 (pdhD_3)
00640 Propanoate metabolism
SAMEA4384060_1841 (pdhD_3)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
SAMEA4384060_1841 (pdhD_3)
00280 Valine, leucine and isoleucine degradation
SAMEA4384060_1841 (pdhD_3)
00310 Lysine degradation
SAMEA4384060_1841 (pdhD_3)
00380 Tryptophan metabolism
SAMEA4384060_1841 (pdhD_3)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
SAMEA4384060_1841 (pdhD_3)
00670 One carbon pool by folate
SAMEA4384060_1841 (pdhD_3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spic04147
]
SAMEA4384060_1841 (pdhD_3)
Enzymes [BR:
spic01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
SAMEA4384060_1841 (pdhD_3)
Exosome [BR:
spic04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
SAMEA4384060_1841 (pdhD_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
GIDA
HI0933_like
FAD_oxidored
NAD_binding_8
FAD_binding_2
3HCDH_N
Lys_Orn_oxgnase
FAD_binding_3
AlaDh_PNT_C
DAO
UDPG_MGDP_dh_N
Thi4
NAD_binding_7
Motif
Other DBs
NCBI-ProteinID:
SNV06189
LinkDB
All DBs
Position
1:complement(1929023..1930429)
Genome browser
AA seq
468 aa
AA seq
DB search
MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGELGGVCLNVGCIPSKALLH
VSHVFQEAQHSDNLGIIAKDVELKFDKVQDFKKSVVNKLTGGVEGLLKGNKVEIVKGEAY
FHDSNSLRVMDEKSAQTYNFKNAIIATGSRPIEIPNFKFGERVIDSTGALNLQEAPKKLV
VVGGGYIGSELGTAFANFGTEVTILEGAKDILGGFEKQMTQPVKKKMKEKGIEIVTEAMA
KSAEETADGVKVTYEAKGEEKSIEADYVLVTVGRRPNTDEMGLEEVGIKFADRGLLEVDD
QSRTSVKNIFAIGDIVPGLPLAHKASYEGKVAAEAISGEKSAVDYIGMPAVCFTEPELAT
VGYNEAQAKEEGLDYKASKFPYAANGRALSLDDTTGFVKLLTLKEDGTLIGAQVVGTGAS
DLISELGLAIESGMNAEDIALTVHAHPTLGEMSMEAAEKAIGLPIHTM
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggtagttggtgattttccaattgaaacagatactattgtaatcggagcaggtccaggg
ggttatgttgcagcaattcgcgcagcacaattaggacaaaaagttaccatcgttgagaaa
ggcgaattaggcggtgtatgtcttaacgtaggatgtatcccatctaaagcattattgcac
gtttcacacgtattccaagaagcacaacattcagataacttaggtattatcgctaaagat
gttgagcttaaattcgacaaagtacaagacttcaaaaaatctgttgttaacaaattaaca
ggcggcgttgaaggattattaaaaggaaacaaagttgaaattgttaaaggtgaagcttac
ttccacgacagcaacagcttacgcgttatggatgaaaaaagtgcacaaacttacaacttc
aaaaatgcaatcattgctacaggttctagaccaattgaaattcctaatttcaaatttggc
gaacgtgttatcgactcaacaggtgctttaaacttacaagaagctcctaaaaaattagtc
gtagtaggcggcggttacattggttctgaattgggcacagcatttgcgaacttcggtaca
gaagttacaattttagaaggtgctaaagatatcttaggcggcttcgaaaaacaaatgact
caaccagttaagaaaaaaatgaaagaaaaaggtattgaaattgttactgaagcaatggct
aaatctgctgaagaaactgcagatggcgttaaagtaacttacgaagctaaaggcgaagaa
aaatcaatcgaagctgattatgtattagttactgttggacgccgtccgaatactgatgaa
atgggtcttgaagaagtcggcatcaaatttgcagaccgcggattattagaagttgacgat
caaagccgtacatcagttaaaaatatctttgcaatcggtgacatcgttcctggtttacca
cttgcacataaagcaagctatgaaggtaaagttgctgctgaagctatctcaggtgaaaaa
tctgcagtagactatatcggtatgccagctgtatgtttcactgaaccagaattagcaaca
gtaggttataatgaagcacaagctaaagaagaaggcttggattataaagcttctaaattc
ccttacgctgctaacggccgtgctttatcattagatgatactactggatttgttaaattg
ttaacacttaaagaagatggtactttaatcggtgcacaagttgtaggtactggtgcgtct
gatcttatctctgaattaggtttagcaatcgaatctggtatgaatgctgaagatatcgca
ttaacagtacatgctcacccaactttaggtgaaatgagcatggaagctgctgaaaaagca
atcggattaccaatccacactatgtaa
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