Staphylococcus piscifermentans: SAMEA4384060_1994
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Entry
SAMEA4384060_1994 CDS
T06938
Symbol
addB
Name
(GenBank) putative ATP-dependent nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
spic
Staphylococcus piscifermentans
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spic03400
]
SAMEA4384060_1994 (addB)
Enzymes [BR:
spic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4384060_1994 (addB)
DNA repair and recombination proteins [BR:
spic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SAMEA4384060_1994 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
SNV07021
LinkDB
All DBs
Position
1:complement(2087134..2090637)
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AA seq
1167 aa
AA seq
DB search
MCYNMDKGGENVSQLNAYIGRAGTGKSHAMLDEIKTKMKEDPLGDPIIIIAPTQSTFQLE
QDFVKDPELNGSMRTEVLHFERLSHRIFQEIGGLTEDYASKGALEMMVFDILQSHRPELN
LYQSQTKYYGFSAKLSEQIQDFKKYAVSPAQLEQFIAENQLQTRTQDKLHDIALVYHYLE
ERLADNFVSSEDTLYKFIEKMDESAWLRKSEIYIDGFHNFSTLEYQIIEKLSQCAKSVSV
LLTTNGDKDPFSLFRKTSATLSHIEEIAQRQQIPFNLRRFTSQERFENQDLSHLESSFNE
LFFEKANVEGHINVLEASNVREEVNAVAREILRKAREENIRYQDVAILYRDDTYAHLMES
IFPEFEIPFNIDTKKSMTHHPVMEMIRSLLEVIETKWSFEPLMRLFKTQVLTKEFKDSRY
LIDILENYVLERGIYGQRWLDDKYFKLEQFNQMGLKRQPMTEETQQVYQRVIDMKNFVID
KILRFEKALSEAETAEAYAAAFYEVFEEFNLPSQLMTERDELDLAGEHEQAEELDQVWNG
FIQTLDDLATVFGDREMTQKRFLELFDVGLEQLEFVMIPQTLDQVSIGSMDLAKVDNKKQ
IYMLGMNDGVMPQTISNSGLISDDEKKYFQEETQLELSPTADVLQMDEAFVCYIAMTRAT
TNVTFSYSLMGLNNDEKEVSPFINNIRDLYTDLNILNVQYAAQYNPLRVMEHPHQTKILL
FEELQGWLNHELTADTWLEAYQAMLHNERLNKGLQYLTSALTFDNKTVQLDTSLSKALYG
DKINASVSRFEGYQQCPFKHYTSHGLRLNERTKYKLENFDLGDIFHSVLKYIADRIHGDF
RNLTDASIRQLTQEALENILPEVQYNLLNSSAYYRYMSVRIGAIVQSTLTALKYQGTFSK
FRPQAFEKSFRKNPSSNEQLAAESLYTSQGIPINIRGQIDRIDTYTNQDRSFVNIIDYKS
SEYSGTLDLTKVYYGLQMQMMTYMDVVLQNKERLNLAESTEPGGLLYFHVHEPRVNFSNW
AEMDEVKRQEELLKSFRLNGLINSNPEVVDAEDTRLEPKFKSDIVPIDVGAKGNLNKSSK
VANSKTIYKFIEHNKNNFVQIASDIMDGHTEVAPMKYKQKLPCEFCNYRSVCHVDGMIDS
KKYRTVDESINPIDLLNQTPDEEEDDE
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtgctacaatatggacaaagggggagaaaacgtgagtcaattaaatgcatatataggg
cgagcaggaactggcaagtctcatgctatgttagatgagattaaaactaaaatgaaagaa
gatccacttggagatccgattatcattattgcaccgacacaaagcacctttcaattagaa
caagatttcgtgaaagatccagaacttaatggcagtatgcgtactgaggttttgcacttt
gaacgcttaagtcatagaatatttcaagaaataggcggtttgacagaagactatgcttct
aaaggcgcattagaaatgatggtctttgatatcttgcagtcacaccgtcctgaattgaat
ttataccaatctcaaactaaatattatggatttagtgctaagttaagtgaacaaattcaa
gattttaaaaagtatgctgtttctcccgcacaactcgaacagtttattgctgaaaatcaa
ttgcaaacaagaacacaagataaattacatgatattgcgcttgtttatcattatttagaa
gaacggttagctgataatttcgtttcttcagaagatacactttataaatttattgagaaa
atggatgaatcagcttggctgagaaagtcagaaatttatatcgatggtttccataacttc
tcgacgcttgaatatcaaattatagaaaagctgtcacaatgcgccaaatctgtcagtgtg
ttgcttactacgaatggggataaagacccgttcagtcttttcagaaaaacttcagcgaca
ttgtcacacattgaagaaattgcgcaaagacaacaaattcctttcaacttacgtcgtttt
acaagtcaagaacgctttgaaaatcaggatttatcacatttagaaagttctttcaatgaa
ctcttttttgagaaagcgaacgtagaagggcatattaatgttttagaggcttcaaatgtt
cgtgaagaagtaaatgcggtagcacgggagattctgcgtaaagcgcgtgaggaaaatata
cgttatcaagatgtagcgattctctatcgtgatgatacttatgcgcatttaatggaaagc
atctttccggaatttgaaattccatttaatattgatacaaagaaatcgatgacgcatcat
ccggttatggaaatgattcgttcattattagaagtgattgaaacgaaatggagtttcgag
ccattaatgcgtttgtttaagactcaagtactgacgaaagaatttaaagatagtcgctat
cttatcgacatcttagaaaactatgtgttagaacgtggtatttatggtcaacgttggtta
gatgataaatactttaaattggaacaatttaatcaaatgggtctgaagcgccaacctatg
acagaggaaacacaacaagtttatcaacgcgttatagatatgaagaactttgtgatagat
aaaatcttgcgttttgaaaaagcattgagtgaagcggaaactgcagaggcgtacgcggct
gctttctatgaagtgtttgaagaattcaatttgccgagtcaattaatgacagagcgagac
gaattagatttagccggcgaacatgaacaagctgaagagctggaccaagtgtggaatggc
tttattcaaacactcgatgacttagctactgtgttcggtgatagagaaatgacacagaag
cgtttccttgaactctttgatgttggattagaacaattagaatttgtgatgattcctcaa
acgctagaccaagtaagtatcggtagcatggatttggctaaagtagataataaaaaacaa
atttatatgttagggatgaatgatggggtaatgcctcaaacaatctctaattctggatta
atcagtgacgatgagaaaaaatatttccaagaagagacacagcttgagttgagtccgact
gctgacgtattacaaatggacgaagcctttgtgtgttatattgcaatgacaagagcgacg
accaatgttactttttcttatagcttaatgggtctcaataatgatgaaaaggaagtcagc
ccgtttattaataatattcgtgacctttacactgatttgaatatattaaatgtacaatat
gctgcacaatacaacccgttgagagtaatggaacatccgcatcaaaccaaaattctgctg
tttgaagaattgcaaggatggttgaatcatgaattaactgctgatacttggttagaagct
tatcaagcaatgttgcataatgagcgcttgaataaaggattgcagtatctgacatctgcc
ttaactttcgataacaaaacagtacaattagatacttctttatcgaaagctctatatggt
gataaaatcaatgccagcgtttctcgatttgaaggctatcagcagtgtccattcaaacat
tatacttcacacgggttacgtctgaatgagcgtacgaaatataaattagagaattttgat
ttaggagatatcttccactctgtattgaaatatattgctgatagaatccatggcgatttc
cgtaaccttacagatgcttctatccgtcaacttacacaagaagctttagaaaatatcttg
cctgaagtccaatacaacttgttgaattcctcagcatattatcgttatatgtcagtacgt
atcggtgcgattgtgcaatcgactttaacagcattaaaatatcaaggtactttttctaaa
ttcagacctcaagcttttgaaaaatcatttagaaaaaatcctagctctaatgagcagctt
gcagcagaatcactatatacctctcaaggtataccgataaatatccgcggccaaattgac
cgtattgatacgtacaccaatcaagaccgcagttttgtgaatataattgattacaaatca
tcagaatacagtggaactctagatttaacgaaggtttattatggattgcaaatgcagatg
atgacctatatggatgtagtactgcaaaataaagaacgcttgaatttagcagagtccaca
gaaccaggaggcttattatatttccacgtgcacgaaccgcgtgttaatttttccaattgg
gctgagatggatgaagtaaaaagacaagaagaattgttgaaatccttcagattaaatgga
ttaatcaatagcaatcctgaagtcgttgatgctgaagataccagattagaacctaaattc
aagtcagacattgtcccaatagacgtaggcgcaaaaggtaatttgaataagagtagtaaa
gttgcaaactcgaaaaccatttataaatttattgaacataataaaaataacttcgtgcaa
attgcttcggatattatggatggacacactgaagtggcacccatgaaatataaacagaag
ctgccttgcgaattttgcaattatcgttctgtgtgtcatgttgatggcatgatagatagt
aagaaatatagaacagtggatgaaagtattaatccgattgatttattaaatcaaacacca
gatgaagaggaggatgacgaatga
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integrated database retrieval system
