Staphylococcus piscifermentans: SAMEA4384060_2054
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Entry
SAMEA4384060_2054 CDS
T06938
Symbol
csdB
Name
(GenBank) putative selenocysteine lyase
KO
K11717
cysteine desulfurase / selenocysteine lyase [EC:
2.8.1.7
4.4.1.16
]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic00450
Selenocompound metabolism
spic01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
SAMEA4384060_2054 (csdB)
Enzymes [BR:
spic01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.7 cysteine desulfurase
SAMEA4384060_2054 (csdB)
4. Lyases
4.4 Carbon-sulfur lyases
4.4.1 Carbon-sulfur lyases (only sub-subclass identified to date)
4.4.1.16 selenocysteine lyase
SAMEA4384060_2054 (csdB)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Aminotran_5
Cys_Met_Meta_PP
Aminotran_1_2
DegT_DnrJ_EryC1
Beta_elim_lyase
SelA
Pyridoxal_deC
Motif
Other DBs
NCBI-ProteinID:
SNV07362
LinkDB
All DBs
Position
1:complement(2146251..2147489)
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AA seq
412 aa
AA seq
DB search
MADTLNVNEIIEDFPILKEQVNGKRLAYLDTTATSQKPLQVIEAIDDYYKRYNSNVHRGV
HTLGSLATDGYEGARETVRRFINARYFEEIIFTRGTTASINLVARSYGDANISEGDEIVV
TEMEHHANIVPWQELAHRKNATLKFIPMTETGELNIEDVKATINDKTKIVAVAHVSNVLG
TINDVKEIAKVAHEHGAIISVDGAQSAPHMKLDMQDLDVDFYSFSGHKMLGPTGIGVLYG
KRDLLKNMEPIEYGGDMIDFVGKYDATWTDLPVKFEAGTPLIAQAIGLAEAIKYLENIGF
DAIHAHEKELTEYAYEQMSQVEDLEIYGPPKDRRAGVITFNIKDIHPHDVATALDTEGVA
VRAGHHCAQPLMKWLGQSSTARASFYIYNTKEDIDQLVYALKQTKEFFSYEF
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatacactcaatgttaatgaaattatagaagattttccgattttaaaagagcaa
gtaaacggcaaacgcttggcttatttagatacaacggcaacaagtcagaagccacttcaa
gtcattgaagcaattgacgattattataaacgctataattccaatgttcaccgcggtgtg
cacacactcggttctttagcaacagacggatacgaaggtgcacgtgaaacagtaagacgt
tttattaatgcacgttacttcgaagaaatcattttcacacgaggtactacagcttctatt
aacctagtggcacgcagttacggtgatgcgaacatttcagaaggcgacgaaatcgtggta
actgaaatggaacatcacgcaaacattgtaccttggcaagaattggcacatcgtaaaaat
gcgacattaaaattcataccgatgactgaaacgggtgaattgaatattgaagatgtcaaa
gcgacaattaatgataaaacaaaaattgtagcagtagcgcatgtttcgaacgtgctagga
acaattaacgatgtcaaagaaatagcgaaagttgctcatgaacatggggcgattatcagc
gtagacggtgcgcaatctgcaccgcatatgaaactggatatgcaagatttagacgtagac
ttctacagcttcagcggccataagatgttaggtccgactggcattggcgtcctatatggt
aaacgtgatttgttgaagaatatggaaccgattgaatatggcggcgacatgattgatttt
gtaggcaaatacgatgcgacttggacagatttaccagttaaattcgaagcggggacaccg
ttaattgcacaagcaatcggtttagcagaagctatcaaatatcttgagaatattggtttt
gatgctattcatgcgcatgaaaaagaattaactgaatatgcatatgaacaaatgtctcaa
gttgaagacttagaaatttacgggcctccgaaagacagacgtgcgggcgtaattactttc
aacattaaagatattcatccgcatgatgttgcaacagcactagatactgaaggtgttgcg
gtacgagcaggtcaccactgtgcacaaccgcttatgaaatggttgggccaatcttcaaca
gcgagagcaagtttctatatctataatacgaaagaagacattgatcaacttgtatatgct
ttgaaacaaacgaaggagtttttctcatatgaattttaa
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