Staphylococcus piscifermentans: SAMEA4384060_2322
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Entry
SAMEA4384060_2322 CDS
T06938
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA4384060_2322 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spic03021
]
SAMEA4384060_2322 (rpoC)
03400 DNA repair and recombination proteins [BR:
spic03400
]
SAMEA4384060_2322 (rpoC)
Enzymes [BR:
spic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA4384060_2322 (rpoC)
Transcription machinery [BR:
spic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA4384060_2322 (rpoC)
DNA repair and recombination proteins [BR:
spic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA4384060_2322 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
SNV09042
LinkDB
All DBs
Position
1:complement(2408781..2412419)
Genome browser
AA seq
1212 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEEVIYFASYVVVDPGPTGLEKKSLLSEAEYREYYDKYPGQFVAKMGAEGIKDLLS
EIDLDEELKELRTELESATGQRLTRAIKRLEVVESFRNSGNDPSWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERMEDEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGAIFNNTNEVLKAYQNGYVHLHTRIGLH
AGSLNNPTFTAEQNNKILTTSVGKVIFNEIIPDSFAYINEPTQSNLEDKTPDKYFVSATE
LGEGGLKEYFAEQELVEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKYSSKAGI
TVGVSDIIVLPDKQEILDEHEKLVERVQKQYNRGLITEDERYNAVIEIWTDAKDEIQSRL
MKSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIEMPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETVRHPETNEVLVEPDQLITPEIAKRITDAGIEQMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITDIEGTVEDIKLAKDRQQEIVIKGANETRSYLASGTSRLKVEKGQ
HVERGEVLTEGSIEPKNYLAVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHNFTDANREAFKERKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSEAKYDKHVDPMVEEA
IEELAESNTPQQ
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataatttccattatatgaaaatcggccttgcttcacctgaaaagatt
cgttcttggtcgtacggtgaggttaagaaacctgaaactatcaactatcgtactttaaaa
cctgaaaaagatggtttgttctgcgaaagaattttcggacctacaaaagattgggaatgt
agttgcggtaagtataaacgcgtgcgttataaaggcatggtttgtgaccgttgtggtgta
gaagtaactaaatctaaagtacgtcgtgaaagaatgggccatattgaactagcggctcct
gtatctcatatttggtactttaaaggtattccaagtcgtatgggactattattagatatg
tctcctagatcattagaagaagttatctatttcgcttcttacgtggttgtagatccaggt
ccaactggtttagagaaaaaatcattgctttctgaagcagaatacagagaatactatgat
aaatatcctggtcaattcgttgctaaaatgggtgctgaaggtattaaagacttactatca
gaaatcgatttagatgaagaattgaaagaattgcgtactgaattagaatcagctactggc
caaagattgacacgtgcaatcaaacgtttagaagtagttgaatcattcagaaactcaggt
aacgatccttcatggatgattttggatgtacttccaattattcctccagaaatccgtcca
atggtgcaattagacggcggacgtttcgcaacaagtgacttgaacgacttatatcgtcgt
gttatcaaccgtaacaaccgtttgaaacgtttattagacttaggtgctcctggcatcatt
gttcaaaacgaaaaacgtatgttgcaagaagcagttgatgctttaatcgataacggtcgt
cgtggtcgtccagttacaggtccaggtaaccgtccattaaaatcactttcacatatgttg
aaaggtaaacaaggacgtttccgtcaaaacttattaggtaaacgtgttgactattcaggc
cgttcagttattgcagtaggaccaagcttgaaaatgtatcaatgtggtctacctaaagaa
atggcgttagaattattcaaacctttcgttatgaaagaattagttcaacgtgaaattgcg
acaaatatcaaaaatgctaaaagtaaaattgaacgcatggaagacgaagtatgggatgtt
ttagaagatgttattaaagagcacccagttctattaaaccgtgcgcctacgttacacaga
ttaggtatccaagctttcgaacctacattggttgaaggccgtgccatccgtttacaccca
ttggtaacaacagcatataacgctgacttcgatggtgaccaaatggcggtacacgtacct
ttatctaaagaagcacaagcagaagcacgtatgttgatgcttgcagctcaaaacatcttg
aaccctaaagacggtaaaccagtagttacaccatcacaagatatggtattaggtaactat
taccttactttagaacgtaaagatgcagtgaatactggagctatctttaataacacaaat
gaagtcttaaaagcctaccaaaacggttatgtgcacttacacacacgtatcggacttcat
gcaggttcattaaacaacccaacatttactgcagaacaaaacaataaaattcttacaact
tcagttggtaaagttattttcaatgaaatcattccagattcatttgcttatatcaatgaa
ccaacacaatcaaacttagaagataaaactcctgataaatatttcgtaagtgctactgaa
cttggtgaaggcggcttgaaagagtactttgctgaacaagaattagtagaaccatttaat
aaaaaattcttaggaaatattatcgccgaagtcttcaatcgtttcagcattacagatact
tctatgatgcttgaccgtatgaaagacttaggtttcaaatattcttctaaagccggtatt
actgttggtgtatctgacatcatcgtattaccagataaacaagaaattttagatgaacat
gaaaaattagttgaacgtgttcaaaaacaatataatcgtggtttaatcactgaagatgaa
cgttacaatgctgtcatcgaaatttggacagatgctaaggatgaaattcaaagtcgattg
atgaaatccctagagaaaactaacccaatcttcatgatgagtgactctggtgcccgtggt
aacgcatctaactttactcagttagccggtatgcgtggtttaatggctgcaccatcaggt
aaaattatcgaaatgcctatcacatcttcattccgtgaaggtttaacggtattagagtac
tttatctctactcacggtgcacgtaaaggtcttgccgatacagcacttaaaactgccgat
tcaggttaccttacacgtcgtttggttgacgttgctcaagacgttatcgttcgtgaagaa
gattgtggaactgaccgcggcttacttgtttctgatatcaaagaaggtacagaaatgatt
gaaccatttatcgaacgtattgaaggacgttattctaaagagacagttcgtcatcctgaa
acaaatgaagtattagtagaacctgatcaattgattacaccagaaattgcaaaacgtatt
acagatgcaggtattgagcaaatgtatatacgttcagcatttacatgtaacacacgtcat
ggtgtttgtgaaaaatgttacggtaaaaaccttgcaactggtgaaaaagttgaagttggt
gaagcagtcggtacaatcgctgcacaatctatcggtgaaccaggtacacagcttacaatg
cgtaccttccatacaggtggggtagccggaagcgatatcacacaaggtcttccacgtatc
caagagatcttcgaagcacgtaaccctaaaggtcaagcagttatcactgacattgaaggt
acagtagaagatattaaacttgcgaaagaccgtcaacaagaaatcgtgatcaaaggtgct
aacgaaacaagatcttatcttgcttcaggtacatcacgcttgaaagttgaaaaaggacaa
cacgttgaacgcggtgaagtcttgacagaaggttcaatcgagcctaagaactatttagca
gtggctggtttaaatgctacagaaagctacttgcttaaagaagttcaaaaagtttaccgt
atgcaaggtgttgaaattgacgataaacacgttgaagtaatggtacgtcaaatgttacgt
aaagttcgtattatcgaagctggcgatactaaattattaccaggttcacttgtggacatc
cacaactttactgatgcgaaccgtgaagcattcaaagaacgcaaacgcccagcaactgct
aaaccagtattgcttggtattactaaagcgtctcttgaaacagaaagcttcttgtctgct
gcatcattccaagaaacaactcgtgttcttacagatgctgcaatcaaaggtaaacgtgac
gacttgctcggccttaaagaaaacgttattatcggtaaattaattccagcaggtacaggc
atgagacgttatagcgaagctaaatacgataaacatgtcgatccgatggtagaagaagca
atcgaagaacttgctgaatctaacacaccgcaacaataa
DBGET
integrated database retrieval system
