Staphylococcus piscifermentans: SAMEA4384060_2387
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Entry
SAMEA4384060_2387 CDS
T06938
Symbol
mfd
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA4384060_2387 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spic03400
]
SAMEA4384060_2387 (mfd)
Enzymes [BR:
spic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4384060_2387 (mfd)
DNA repair and recombination proteins [BR:
spic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAMEA4384060_2387 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
Glyco_hydro_115
DUF3105
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
SNV09336
LinkDB
All DBs
Position
1:complement(2470456..2473974)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKSIITDYINKDKRYEELSDVFGQENVLVTGLSGAAKATMMAEKYLSSNRPMVVVTNNLY
QADKLEADIQHYVNDDEIYKYPLQDIMTEEFSTQSPQLMSERVRTLTGLAEGQRGFFIIP
LNGLKKLQTPVDIWQSHQVKLSVGDDIDVDDFLNKLVDMGYRRETAVSHIGEFSLRGGII
DIYPLIGNPVRIELFDTEVDSIRQFDIESQRSEENQDIVAITSASDYIITDDVLKRIKVQ
LKEAYEQTRPKIDKAVRNDIKDTYESFLQFDSNFVDHQVIRRLVAFMYEQPATLVDYISN
NAIIAVDEYNRVKDTEETLTTEVNDFMTQLIESGKGFIGQQFMNDKAFEELINSRQITYF
TLFTASMPVKLNHIVKFSSKPVQQFYGQYDIMRSEFQRYVNNGYTVVVLVETETKKDRVK
SMMSEMHIPVVEGAAGEHIEGGHAVITEGSLSEGFELPYMQLAVVTERELFKSKQKKAKK
RTPTMTNAERIKSYQDLKIGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKIQYKGTDQLF
VPVDQMDQVQKYVVSEDKTPRLNKLGGTEWKKTKAKVQQSVEDIADELIELYRERELAQG
YQYGADSEQQHEFEMDFPYDLTADQSKSIVEIKEDMEKERPMDRLLCGDVGYGKTEVALR
AAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVNIQLMSRFRTPKEVKETKQGLK
DGTVDIVVGTHKLLAKDVKYKDLGLLVVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRGGQAFYLYNKVQ
SIYEKKEQLQMLMPEANIGVAHGRMTERELEDTMIGFVNGEYDILVTTTIIETGVDVPNA
NTLIIEDADRFGLSQLYQLRGRVGRSSRVGYAYFLHPTNKVLSETAEERLQAIKEFTELG
SGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETATPEIEI
DLNIDAYLPTEYIPNEQSKIEIYKKLRQIENDEQLMDIKDELIDRFNEYPVQVERLLDIV
EIRIHALNVGVEYIKDTGKAVEVQLSEKGTEDINGEALFKQTLPLGRDMKVGVEDGAMKI
TLTKNKRAGAWFDRLKFLMKALEESMVIPDEA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcaataattacagattatataaataaagataaaagatatgaagaactgagtgac
gtattcggccaagagaatgtgttggtaacaggactttcaggtgcagccaaagctactatg
atggctgaaaagtatttatcttctaatcgcccgatggtagtcgtaactaataacttgtat
caagcagacaagttggaagccgacatccaacattacgtgaatgacgatgaaatctataag
tatccgcttcaagacatcatgactgaggaattctctacccaaagtccccaattgatgagt
gagcgtgtacgcacccttactggcttagcagaaggacagcgagggttctttatcataccg
ttaaacggtttgaaaaaattacaaacgcctgtcgatatttggcaatcacaccaagtgaaa
ctatcagtaggagacgatatcgacgttgatgactttctcaataaattagtcgatatgggt
tatcgcagagaaactgctgtgtcacatatcggtgaattctccttacgaggcggtattatt
gatatttatccgcttatcggcaacccagtacgtatcgagctttttgatacagaagtagat
tctatccgtcagtttgatatcgaatcacaacgctctgaagagaatcaagatatagtagca
atcacttcagctagtgattatattattactgatgatgtactcaaacgtattaaagtacaa
ttaaaagaagcgtatgaacaaacacgtcctaaaatagataaagctgtccgcaatgatatt
aaagacacatatgagagtttcttgcaattcgacagtaatttcgtcgatcaccaagtcatt
cgccgtttagtagcatttatgtatgagcaacctgctacactcgtggactatatcagcaac
aacgctattattgcggtagacgaatataaccgcgtgaaagatactgaagaaactttgacc
actgaagtcaatgactttatgactcaattgattgaaagtggtaaaggctttatcggccaa
cagttcatgaatgacaaagcgtttgaggaactcatcaattccagacaaatcacttatttc
actcttttcacagcaagtatgcctgtcaaattgaaccatattgttaaattctccagcaaa
cctgtacagcagttttatggtcagtatgatatcatgcgttcggaatttcagcgttatgtc
aataatggctacacggtcgtggtcttggtagagacggaaacgaaaaaagaccgtgtgaaa
tctatgatgagtgagatgcatattccagtagtggaaggtgctgcaggagaacatattgaa
ggcggccatgcagtgattacggaaggcagtctttctgaaggtttcgaattgccttacatg
caactggcggtagtcacagaacgtgaattatttaaatctaagcagaagaaggctaagaaa
cgtacgccgacaatgaccaatgccgaacgtatcaaatcttatcaagacttgaaaatcggc
gattatgtggtacatgtccaccatggtgtcggacgttatttaggtgtggaaacgctggaa
gtcggcgatgtgcatcgggactatattaaaattcaatataaaggaacggatcagctcttt
gtaccggtcgaccaaatggatcaagtgcagaagtatgtggtttctgaggacaagacacca
agactcaataaactcggcggtactgagtggaagaaaacgaaggctaaagtacaacaaagt
gtcgaagatattgccgatgaattaatcgaactttatcgcgaacgtgaattggcccaaggt
taccaatatggagctgattcggaacaacaacacgaatttgaaatggatttcccatacgat
ttaactgcagaccaaagcaaatcgattgtggaaatcaaagaagatatggaaaaagaacgc
ccaatggaccgcttgttatgcggcgatgtaggttacggcaagacagaagtagcgcttcgt
gcagcctttaaagcagtaatggaaggtaaacaagtagctttcttagtgccgacaactatc
ttagcgcagcagcactatgaaacgttgattgaacgtatgcaggatttcccggtaaatatt
caattgatgagccgcttccgtacaccaaaagaagtcaaagaaaccaagcaaggattgaaa
gacggcacagtagatatcgtcgtgggtacacacaaactcttagctaaagatgtaaaatat
aaagacttgggcttgctcgttgtcgatgaagagcaacgtttcggcgtccgtcataaagaa
cgtattaaatccttgaaaacgaatgttgatgtgctgacactgacagcaacaccgattccg
cgtacactccatatgagtatgctcggtgtacgggacttgtcagtcattgaaacgccgcca
gaaaaccgcttcccagttcaaacttatgtcctagaacaaaattcaaactttatcaaggaa
gcgttagaacgagaattatctcgtggcggccaagcattctatctctacaataaagttcaa
tctatttatgagaagaaagaacagctgcaaatgttgatgccggaagcgaatatcggtgtc
gcacatggacggatgactgaacgtgaactagaagatacgatgattgggtttgttaacggc
gaatacgacattttggtaacgacaacgattattgaaaccggtgtcgacgtaccgaatgcg
aatacgttgattatcgaagatgcggaccgcttcggcttgagccaattgtatcaattgcgc
ggacgtgtcggtcgttcatcgcgtgtcggttatgcttacttcttgcatccgacaaacaaa
gtattatctgaaacagcggaagaacgcttgcaagctattaaagagtttactgaactcggc
agcggattcaaaattgccatgcgtgatttaaatatccgtggtgccggaaatctgctcggt
aaacagcagcacggctttattgattcagtcggcttcgacttgtattcacaaatgttggaa
gaagcggttaatgaaaaacgaggcattaaagaagaaacggcaacaccagaaattgaaatc
gaccttaatattgatgcttacttgccgacagaatatattccgaacgaacaatctaaaatt
gaaatctataaaaagttacgtcaaattgaaaatgacgaacaattgatggacattaaagat
gaactaatagatcgcttcaacgaatatccagtacaagttgaacgtctgctcgatatcgta
gaaatacgtattcatgcactgaatgtcggagtagaatacattaaagatactggcaaagcc
gtcgaagtgcagctgtcagaaaaaggcacagaagatattaatggggaagccttattcaaa
caaaccttgccattaggacgtgacatgaaagtcggcgttgaagacggcgccatgaagatt
accttgacgaaaaataaacgtgcaggcgcttggttcgaccgcttgaaattcttaatgaaa
gccttagaagaaagcatggttatcccagatgaagcgtaa
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integrated database retrieval system
