Staphylococcus piscifermentans: SAMEA4384060_2408
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Entry
SAMEA4384060_2408 CDS
T06938
Symbol
holB
Name
(GenBank) putative DNA polymerase III, delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic03030
DNA replication
spic03430
Mismatch repair
spic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4384060_2408 (holB)
03430 Mismatch repair
SAMEA4384060_2408 (holB)
03440 Homologous recombination
SAMEA4384060_2408 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spic03032
]
SAMEA4384060_2408 (holB)
03400 DNA repair and recombination proteins [BR:
spic03400
]
SAMEA4384060_2408 (holB)
Enzymes [BR:
spic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA4384060_2408 (holB)
DNA replication proteins [BR:
spic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMEA4384060_2408 (holB)
DNA repair and recombination proteins [BR:
spic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMEA4384060_2408 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
DNA_pol3_gamma3
HTH_WhiA
DUF1048
MapZ_EC1
Motif
Other DBs
NCBI-ProteinID:
SNV09450
LinkDB
All DBs
Position
1:complement(2492938..2493864)
Genome browser
AA seq
308 aa
AA seq
DB search
MDELSRLTKAYQSGKLSHAYLFEGDDGQTMQQTAMAFAKLILCNDNEICQAKVDEMNHPD
FRYVSTEETNIKKEKIEALVHAMNQLPVEGSFKVYIIDSFEKLTVQGENSILKFLEEPPE
NTIAILLSTKPEQILSTIHSRCQHVYFKPMSQTLLIERLEEQAISKPIAEMLSTYTTQIE
EARNLNEEYDLAALRKNIVNWCQLLLSNRAMALIALVDLMKSAKNKKLQQLTLSAVNAFF
QDIMHEKAETSGHLVFSEMETDIKHYAEHLSYAQLTHMYDHITEAHKKLTQNVNPMLVFE
QIVIKGVD
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggatgaattatcaagattgacgaaagcttatcaatctgggaaactttcgcatgcctac
ttatttgaaggcgatgatggccaaacaatgcaacaaactgcaatggcatttgcgaaatta
attttatgcaatgacaatgaaatatgccaagcgaaagttgatgaaatgaatcatccggac
tttagatatgtttcgactgaagaaactaatataaagaaagaaaaaatcgaagcactcgtg
catgcgatgaatcagcttccagttgagggatcatttaaagtatatattattgatagtttt
gaaaagctgacagtgcaaggtgaaaatagtatcttgaaatttttagaagaacctccagag
aatacgattgcaattttactttctactaagccagagcaaatcttaagtactattcattca
cgttgccagcatgtctacttcaaacccatgtctcaaacgcttttaatcgaacgtctggaa
gaacaagcgatttctaaacctattgcagaaatgctcagtacatatacaacacaaatagaa
gaagcgcgtaacttaaacgaagaatatgatttagcggctttaagaaagaatattgtaaac
tggtgtcaactattactttctaatagagcaatggcactgattgctttagttgatttaatg
aaatcagctaaaaataaaaagctgcagcaactgacactgtctgctgtgaatgcttttttc
caagatatcatgcatgaaaaggctgaaacttcgggacacttggttttttcggaaatggaa
acagatattaaacattatgcagagcacttaagttatgctcaattaacgcatatgtatgat
catataacggaagcacataagaaactgacgcagaatgtgaatccgatgcttgtatttgaa
caaattgtaattaaaggggtggactaa
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