Streptomyces phytohabitans: ABXR15_05200
Help
Entry
ABXR15_05200 CDS
T10861
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spih Streptomyces phytohabitans
Pathway
spih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABXR15_05200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spih03019
]
ABXR15_05200
03400 DNA repair and recombination proteins [BR:
spih03400
]
ABXR15_05200
Enzymes [BR:
spih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABXR15_05200
Messenger RNA biogenesis [BR:
spih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABXR15_05200
DNA repair and recombination proteins [BR:
spih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABXR15_05200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
SWI2_SNF2
AAA_22
Helicase_RecD
YwqJ-deaminase
Motif
Other DBs
NCBI-ProteinID:
XCX48609
LinkDB
All DBs
Position
complement(1260241..1262400)
Genome browser
AA seq
719 aa
AA seq
DB search
MDDLELRTEADAVLAGLVGAPEGSARLREDQWQAVAALVRERRRALVVQRTGWGKSAVYF
VATALLRRRGSGPTVIVSPLLALMRNQVEAAARAGIQARTINSANPEEWDTIHEEVERGE
TDVLLVSPERLNSVDFRDQVLPKLAETTGLLVVDEAHCISDWGHDFRPDYRRLRAMLAEL
SPGVPVLATTATANARVTADVAEQLGTGAGEALVLRGPLDRESLRLGVVRLPDAAHRLAW
LAEHLDELPGSGIVYALTVAAAEEATTFLRQRGFRVSSYTGRTENADRLQAESDLLENRV
KALVATSALGMGFDKPDLGFVAHLGSPSSPIAYYQQVGRAGRGVEHADVLLLPGKEDEAI
WRYFADTAFPPETQVRRTLAALADADRPLSVPALEALVELRRTRLETMLKVLDVDGAVKR
VKGGWISTGEEWAYDAERYAWVARQRSAEQQAMRDYVETSRCRMEFLRRQLDDEGAQPCG
RCDNCAGPWAATGVSADALTGATRELDRPGVEVEPRRMWPTGMAALGVDLKGRIPAGEQS
TTGRALGRLSDIGWGNRLRPLLAENAPDGPVPDEVLRASVAVLADWARSPGGWASDGPDA
MARPVGVVAVPSLSRPQLVDSLARGIADVGRLPFLGTLTYTGPDGAHAVRRSNSAQRLKA
LSGAFAVGGDLAGALAGARGPVLLVDDYTDTGWTLAVAARLLRRAGSEHVLPLTLAAAA
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggacgatctggagctgcgtaccgaagcggatgccgtactcgccggactggtcggggcc
ccggagggctccgcgcggctccgtgaggaccagtggcaggccgtggccgcgctggtgcgg
gagcggcgccgcgccctggtggtgcagcgcaccggctggggcaagtcggcggtctacttc
gtcgccaccgccctgctgcgccgccgcggctccgggccgaccgtgatcgtgtcgccgctg
ctggcactcatgcgcaaccaggtcgaggcggccgcgcgggccggtatccaggcgcgcacc
atcaactccgccaaccccgaggagtgggacaccatccacgaggaggtcgaacgcggtgag
accgacgtcctcctcgtcagtccggaacgcctgaactccgtcgacttccgcgaccaggtg
ctgccgaagctcgccgagaccaccggcctgctggtggtcgacgaggcgcactgcatctcc
gactggggccacgacttccggcccgactaccgacgactgcgcgcgatgctcgccgagctc
tcgcccggcgtacccgtcctggccaccaccgccaccgcgaacgcgcgggtgacggcggac
gtggccgagcagttgggcaccggcgcgggtgaagccctggtgctgcgcggaccgttggac
cgcgagagcctccggctgggggtcgtccggctcccggacgccgcgcaccgcctggcctgg
ctcgcggagcacctggacgagctgccgggctccgggatcgtgtacgccctcacggtcgcc
gcggcggaggaggccaccaccttcctgcggcagcgtggattccgggtgtcctcgtacacg
gggcgtacggagaacgccgaccggctgcaagccgaatccgacctgctggagaaccgggtc
aaggcgctggtggccacgtccgcgctcggcatggggttcgacaaaccggacctcggcttc
gtggcccacctcggttcgccctcgtccccgatcgcctactaccaacaggtgggacgggcg
ggccgcggcgtggagcacgccgacgtactcctcctgccgggcaaggaggacgaggccatc
tggcgctacttcgccgatacggccttcccgcccgagacccaggtccgccgcaccctcgcc
gcactcgcggacgccgaccggccgctctccgtacccgccctcgaagccctcgtcgagctg
cggcgcacccggctggagaccatgctcaaggtcctcgatgtggacggcgccgtgaagcgc
gtcaagggcggctggatctccacgggcgaggagtgggcctacgacgccgagcggtatgcc
tgggtggcccgccaacggtccgccgaacagcaggccatgcgcgactacgtggagacctcc
cgctgccggatggagttcctgcgccgccagttggacgacgagggcgcccagccgtgcggc
cggtgcgacaactgcgcgggcccatgggccgccacgggtgtctcggcggacgccctgacg
ggcgcgacacgggaactggaccggccgggcgtggaggtcgagccgcgtcggatgtggccg
accggcatggccgcgctgggcgtcgacctcaaggggcgcatcccggcgggggagcagtcc
acgacgggacgtgcgctgggcaggctctccgacatcgggtggggcaacaggctgcgtccg
ctgttggcggagaacgcgcccgacgggcccgtgcccgacgaggtcctgcgtgcctcggtg
gcggtcctcgccgactgggcgcgttcgccggggggttgggcgtcggacgggcccgacgcc
atggcccgaccggtcggcgtcgtcgccgtcccgtccctgtcccgaccgcagctggtcgat
tcgctggcgcgggggatcgcagacgtcggccgcctcccgttcctcggcacgctgacgtac
accgggccggacggcgcgcacgcggtacgccggagcaactcggcccaacgactcaaggcg
ctctcgggggccttcgccgtcggaggcgacctggccggcgcgctggccggggcgcggggg
cccgtactgctcgtcgacgactacaccgacacgggctggaccctggccgtcgctgcccgg
ctgctccgccgcgcggggagcgaacacgtgctgccgctgaccctcgccgcggcggcctga
DBGET
integrated database retrieval system
