Streptomyces phytohabitans: ABXR15_09960
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Entry
ABXR15_09960 CDS
T10861
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spih Streptomyces phytohabitans
Pathway
spih03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spih00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABXR15_09960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spih03021
]
ABXR15_09960
03400 DNA repair and recombination proteins [BR:
spih03400
]
ABXR15_09960
Enzymes [BR:
spih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABXR15_09960
Transcription machinery [BR:
spih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABXR15_09960
DNA repair and recombination proteins [BR:
spih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABXR15_09960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
XCX52603
LinkDB
All DBs
Position
complement(2445783..2449697)
Genome browser
AA seq
1304 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLPSLEAHIGVERQQIEQRRDSDLENRAKKQEND
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGANALQKRLETFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEQRKTIGD
ERSFNSVAEAIMAFDAGELSLQAKIDIRFPIGTVPPRGWTPPVRQDEDGGTGEAEYQPGD
SFRLRTTLGRALFNELLPEDYPFVDNSVGKKQLSGIVNDLAERYPKVVVAAALDNLKAAG
FHWATRSGVTVAISDVVVPEAKQGIIESYEAQDEKVQKQYERGLITKDERTQELIAIWTK
ATNEVSEAMNENFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASF
REGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLE
IAAKGADGVLRKAENVETSVYARALAEDIVIDGKVLAPANTDLGDVLIDELVRHGVETVK
TRSILTCESTVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVVELFEARTPKGVAPISESAGRVRIEETEKTKKVVVTPDDGSEETAYGVS
KRARLKVSEGEHVTVGQPLTVGATNPHDVLRILGQRAVQVHLVNEVQKVYNSQGVSIHDK
HIEIIIRQMLRRVTIIESGDAELLPGELVERTKFEGENRRVVTEGGHPASGRPQLMGITK
ASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRV
EPTEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNA
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgaactgcgtatcggcctggccaccgctgacgacatc
cgccagtggtcgcacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
ccggaaaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgaactggccgcgccc
gtcacccacatctggtacttcaagggcgtcccgtcccggctgggttacctgctggacctc
gccccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacgtacgtcgac
gaggagcgccgcacccgcgacctgccctccctggaggcgcacatcggggtggagcgccag
cagatcgagcagcgccgcgactccgacctggagaacagggcgaagaagcaggagaacgac
ctcgccgagctggaggccgagggcgccaaggcggacgtgcgccgcaaggtgcgcgagggt
gccgagcgcgagatgaagcagctccgcgaccgcgcccagcgcgagatcgaccgcctcgac
gaggtgtggagccgcttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacgtacttcgacggttcgatgggcgccaacgcg
ctccagaagcgcctggagaccttcgacctcgacgaggaggccgagcgtctccgcgagatc
atccgtaccggcaagggccagaagaagacccgcgcgctgaagcgcctcaaggtcgtctcc
gcgttcctccagaccagcaacagccccaagggcatggtgctggactgcgtgccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcgactgctcgacctc
ggcgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggtccgggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccggcagaacctgctgggcaag
cgcgtggactactcggcgcgttccgtgatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgccgaaggcgatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtcggcgaagcgcatggtcgagcgcggccgt
acggtcgtgtacgacgtgctggaagaggtcatcgccgagcaccccgtgctgctcaaccgg
gcgccgacgctgcaccgtctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagatccacccgctcgtgtgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccggccgacggccgtcccgtgaccatgcccacccaggac
atggtgctcgggctgttcttcctcaccaccgacgaggagcagcggaagacgatcggcgac
gagcggtcgttcaactcggtcgccgaggcgatcatggcgttcgacgccggtgagctgtcg
ctccaggcgaagatcgacatccgcttcccgatcggcacggtcccgccccgcggctggacg
cccccggtccgccaggacgaggacggcggcacgggcgaggccgagtaccagcccggcgac
agcttccggctgcgtacgacgctgggccgcgcgctcttcaacgaactgctgcccgaggac
tacccgttcgtcgacaactcggtgggcaagaagcagctctccgggatcgtcaacgacctg
gccgagcgctacccgaaggtcgtcgtcgccgcggcgctcgacaacctgaaggccgccggt
ttccactgggcgacccgctccggtgtcaccgtcgcgatctccgacgtggtggtgcccgag
gcgaagcaggggatcatcgagtcgtacgaggcccaggacgagaaggtccagaagcagtac
gagcgcggcctgatcaccaaggacgagcgcacccaggaactcatcgcgatctggaccaag
gcgaccaacgaggtctccgaggcgatgaacgagaacttcccgaagacgaaccccatcttc
atgatggtcgactcgggtgcgcgcggaaacatgatgcagatgcgtcagatcgcgggtatg
cgcggtctggtgtccaacgcgaagaacgagaccatcccgcggccgatcaaggcgtcgttc
cgcgagggcctcaccgtgctggagtacttcatctccacgcacggcgcccgtaagggcctc
gcggacaccgcgctgcgtacggcggactcgggttacctgacccgtcgtctcgtcgacgtc
tcgcaggacgtgatcatccgcgaggaggactgcggcaccgagcgcggcctcaagctggag
atcgcggccaagggcgcggacggcgtactgcgcaaggcggagaacgtcgagaccagcgtg
tacgcgcgggcgctcgccgaggacatcgtcatcgacggcaaggtgctggccccggccaac
accgacctgggcgacgtgctcatcgacgagctggtccggcacggcgtggagacggtcaag
acccgttccatcctcacctgcgagtccaccgtcggcacctgcgcgatgtgctacgggcgt
tcgctggccaccggcaagctggtggacatcggcgaggccgtcggcatcatcgcggcccag
tccatcggtgagcccggcacacagctgacgatgcgtacgttccacaccggtggtgtggcg
ggtgacgacatcacgcagggtctgccgcgtgtggtcgagctgttcgaggcccgtacgccg
aagggtgtcgcgccgatctccgagtcggccggccgcgtgcgcatcgaggagaccgagaag
acgaagaaggtcgtcgtcactcccgacgacggctccgaggagaccgcgtacggcgtgtcc
aagcgcgctcgcctgaaggtgagcgagggcgaacacgtcaccgtgggccagccgttgacc
gtgggtgccaccaacccgcacgacgtgctgcgcatcctcggccagcgcgccgtccaggtg
cacctggtcaacgaggtccagaaggtctacaactcgcagggcgtgtcgatccacgacaag
cacatcgagatcatcatccggcagatgctgcgccgcgtgacgatcatcgagtccggcgac
gcggagctgctgccgggcgagctggtggagcggacgaagttcgagggcgagaaccgtcgc
gtggtcacggaaggcggccacccggcctccggccgtccgcagctgatgggtatcaccaag
gcttcgctggccaccgagtcgtggctgtcggcggcgtccttccaggagacgacccgggtg
ctcaccgacgcggcgatcaacgccaagtcggactccctgatcggcctcaaggagaacgtc
atcatcggcaagctcatcccggccggtacgggtctgtcccgctaccgcaacatccgggtc
gagcccaccgaggaggcgaaggccgcgatgtactcggccgtcggttacgacgacatcgac
tactcgcccttcggcaccggctccggccaggcggtcccgctggaggactacgactacggg
ccgtacaacgcctga
DBGET
integrated database retrieval system
